Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NNG64_RS09230 Genome accession   NZ_CP101610
Coordinates   1900201..1900980 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus siamensis strain WYJ-E14     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895201..1905980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNG64_RS09200 (NNG64_09180) fliH 1895246..1895998 (-) 753 WP_060962793.1 flagellar assembly protein FliH -
  NNG64_RS09205 (NNG64_09185) fliG 1895991..1897007 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NNG64_RS09210 (NNG64_09190) fliF 1897020..1898630 (-) 1611 WP_060962794.1 flagellar basal-body MS-ring/collar protein FliF -
  NNG64_RS09215 (NNG64_09195) fliE 1898676..1898996 (-) 321 WP_060962795.1 flagellar hook-basal body complex protein FliE -
  NNG64_RS09220 (NNG64_09200) flgC 1899007..1899459 (-) 453 WP_016936125.1 flagellar basal body rod protein FlgC -
  NNG64_RS09225 (NNG64_09205) flgB 1899459..1899848 (-) 390 WP_016936126.1 flagellar basal body rod protein FlgB -
  NNG64_RS09230 (NNG64_09210) codY 1900201..1900980 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NNG64_RS09235 (NNG64_09215) hslU 1901018..1902430 (-) 1413 WP_256077390.1 HslU--HslV peptidase ATPase subunit -
  NNG64_RS09240 (NNG64_09220) hslV 1902438..1902983 (-) 546 WP_060962797.1 ATP-dependent protease subunit HslV -
  NNG64_RS09245 (NNG64_09225) xerC 1902999..1903916 (-) 918 WP_060962798.1 tyrosine recombinase XerC -
  NNG64_RS09250 (NNG64_09230) trmFO 1903986..1905293 (-) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=710857 NNG64_RS09230 WP_013352252.1 1900201..1900980(-) (codY) [Bacillus siamensis strain WYJ-E14]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=710857 NNG64_RS09230 WP_013352252.1 1900201..1900980(-) (codY) [Bacillus siamensis strain WYJ-E14]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCAGAAACGCTTCGCGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAACCTTTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATATACGGCTTTCCCTGTTGAAAACAGAGACCTGTTCCA
AGCAGGCTTAACGACGATTGTGCCGATTATCGGCGGAGGAGAGCGCCTGGGCACATTGATCCTGTCCCGTCTGCAGGACC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCAGAA
GAGATCGAAGAAGAAGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTTTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTACTTGTGGCAAGTAAGATTGCCGACCGTGTAGGCATTACCC
GTTCAGTCATCGTTAACGCACTGAGAAAGCTCGAAAGCGCCGGCGTTATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467