Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NMH04_RS08160 Genome accession   NZ_CP101609
Coordinates   1602381..1603160 (+) Length   259 a.a.
NCBI ID   WP_255817008.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 47     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597381..1608160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMH04_RS08140 (NMH04_08115) trmFO 1598085..1599389 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NMH04_RS08145 (NMH04_08120) xerC 1599452..1600369 (+) 918 WP_135008909.1 tyrosine recombinase XerC -
  NMH04_RS08150 (NMH04_08125) hslV 1600384..1600929 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NMH04_RS08155 (NMH04_08130) hslU 1600946..1602346 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NMH04_RS08160 (NMH04_08135) codY 1602381..1603160 (+) 780 WP_255817008.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NMH04_RS08165 (NMH04_08140) flgB 1603450..1603839 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NMH04_RS08170 (NMH04_08145) flgC 1603839..1604291 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NMH04_RS08175 (NMH04_08150) fliE 1604303..1604620 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NMH04_RS08180 (NMH04_08155) fliF 1604671..1606263 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  NMH04_RS08185 (NMH04_08160) fliG 1606275..1607291 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  NMH04_RS08190 (NMH04_08165) fliH 1607284..1608048 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29032.26 Da        Isoelectric Point: 4.6467

>NTDB_id=710789 NMH04_RS08160 WP_255817008.1 1602381..1603160(+) (codY) [Bacillus altitudinis strain 47]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=710789 NMH04_RS08160 WP_255817008.1 1602381..1603160(+) (codY) [Bacillus altitudinis strain 47]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTATTCGATCA
ACCAACAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAGATTGCAGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTGCGTAAGTTAGAAAGTGCAGGCGTTATTGAATCACGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAATAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475