Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NNL28_RS07820 Genome accession   NZ_CP101530
Coordinates   1628117..1628947 (-) Length   276 a.a.
NCBI ID   WP_255819888.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain SNK-6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1623117..1633947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNL28_RS07800 (NNL28_07785) dhaQ 1624247..1625203 (+) 957 WP_255819885.1 DhaKLM operon coactivator DhaQ -
  NNL28_RS07805 (NNL28_07790) dhaS 1625204..1625728 (-) 525 WP_069468888.1 dihydroxyacetone kinase transcriptional activator DhaS -
  NNL28_RS07810 (NNL28_07795) brnQ 1625874..1627256 (-) 1383 WP_191355812.1 branched-chain amino acid transport system II carrier protein -
  NNL28_RS07815 (NNL28_07800) - 1627795..1628061 (+) 267 WP_003701014.1 hypothetical protein -
  NNL28_RS07820 (NNL28_07805) endA 1628117..1628947 (-) 831 WP_255819888.1 DNA/RNA non-specific endonuclease Machinery gene
  NNL28_RS07825 (NNL28_07810) - 1629315..1629917 (+) 603 WP_255819889.1 nitroreductase family protein -
  NNL28_RS07830 (NNL28_07815) - 1629970..1631901 (-) 1932 WP_003705548.1 heavy metal translocating P-type ATPase -
  NNL28_RS07835 (NNL28_07820) - 1632051..1632365 (+) 315 WP_003704272.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30435.78 Da        Isoelectric Point: 10.5636

>NTDB_id=710448 NNL28_RS07820 WP_255819888.1 1628117..1628947(-) (endA) [Ligilactobacillus salivarius strain SNK-6]
MARKKKNKSNKFMRRLATVAVGVALAAVGVNTNHISTPFNNEVVNSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=710448 NNL28_RS07820 WP_255819888.1 1628117..1628947(-) (endA) [Ligilactobacillus salivarius strain SNK-6]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGACGGTTAGCTACCGTAGCAGTAGGGGTTGCTTTAGCAGC
CGTGGGAGTTAATACAAATCATATCAGTACACCTTTTAATAATGAAGTTGTGAATAGCAGTACATATAATAAGAAAGACT
ACACACCTACAGAGGAGCAGGCGAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACCGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAGGATTCTACCGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCACTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489