Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NM966_RS07940 Genome accession   NZ_CP101506
Coordinates   1554666..1555445 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain B12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1549666..1560445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM966_RS07920 (NM966_07895) trmFO 1550370..1551674 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NM966_RS07925 (NM966_07900) xerC 1551737..1552654 (+) 918 WP_191218856.1 tyrosine recombinase XerC -
  NM966_RS07930 (NM966_07905) hslV 1552669..1553214 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NM966_RS07935 (NM966_07910) hslU 1553231..1554631 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NM966_RS07940 (NM966_07915) codY 1554666..1555445 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NM966_RS07945 (NM966_07920) flgB 1555734..1556123 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NM966_RS07950 (NM966_07925) flgC 1556123..1556575 (+) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  NM966_RS07955 (NM966_07930) fliE 1556587..1556904 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NM966_RS07960 (NM966_07935) fliF 1556955..1558547 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  NM966_RS07965 (NM966_07940) fliG 1558559..1559565 (+) 1007 Protein_1517 flagellar motor switch protein FliG -
  NM966_RS07970 (NM966_07945) fliH 1559558..1560322 (+) 765 WP_191218855.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=710292 NM966_RS07940 WP_007499612.1 1554666..1555445(+) (codY) [Bacillus altitudinis strain B12]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=710292 NM966_RS07940 WP_007499612.1 1554666..1555445(+) (codY) [Bacillus altitudinis strain B12]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471