Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NKW85_RS06205 Genome accession   NZ_CP101498
Coordinates   1322922..1325336 (+) Length   804 a.a.
NCBI ID   WP_107584258.1    Uniprot ID   -
Organism   Staphylococcus simulans strain QB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1317922..1330336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKW85_RS06180 (NKW85_06170) - 1318404..1318610 (+) 207 WP_353421991.1 CsbD family protein -
  NKW85_RS06185 (NKW85_06175) - 1318705..1319709 (-) 1005 WP_023016060.1 LLM class flavin-dependent oxidoreductase -
  NKW85_RS06190 (NKW85_06180) - 1319892..1321034 (+) 1143 WP_023016059.1 cysteine desulfurase family protein -
  NKW85_RS06195 (NKW85_06185) mnmA 1321037..1322149 (+) 1113 WP_002481106.1 tRNA 2-thiouridine(34) synthase MnmA -
  NKW85_RS06200 (NKW85_06190) - 1322251..1322919 (+) 669 WP_002481105.1 tetratricopeptide repeat protein -
  NKW85_RS06205 (NKW85_06195) recD2 1322922..1325336 (+) 2415 WP_107584258.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NKW85_RS06210 (NKW85_06200) alaS 1325647..1328277 (+) 2631 WP_023015118.1 alanine--tRNA ligase -
  NKW85_RS06215 (NKW85_06205) - 1328346..1328609 (+) 264 WP_023015119.1 IreB family regulatory phosphoprotein -
  NKW85_RS06220 (NKW85_06210) ruvX 1328613..1329038 (+) 426 WP_002481101.1 Holliday junction resolvase RuvX -
  NKW85_RS06225 (NKW85_06215) - 1329063..1329374 (+) 312 WP_002481100.1 DUF1292 domain-containing protein -
  NKW85_RS06230 (NKW85_06220) - 1329617..1330258 (+) 642 WP_353421992.1 O-methyltransferase -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90581.97 Da        Isoelectric Point: 4.5331

>NTDB_id=710241 NKW85_RS06205 WP_107584258.1 1322922..1325336(+) (recD2) [Staphylococcus simulans strain QB7]
MENPTLFDYSMVKGTVEAILFQNKDNFYTVLKVDPIETNEDFDNMPTIVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKEVPQTKDAIISYLSSDLFKGVGKKTAENIVNTLGENTINKILDDRSVLEEVPNLSKKKQSQIADQIYSNQEVEKIM
IRLHDLGFGPKLAMSIYQVYQSDTLQTIEKNPYDLVYDVRGVGFHKADTLAKNLGIEYNAPERLKAGLLYTIEEECIKQG
HTFLPKDYVLETSLEMLSKGYDQTIDVSMLEKVILELTEESKLVEADETLSIPSLYYSEVKSVQNLYRIASHQAKLENIE
QSDLQINIGEIEEMNGVNYASSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAETHGLSLSYDDYQEDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQDTKPEDVLENEITAKLIIIDEMSMVDTWLFHQFLNAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDAKVIPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITERFHDRSFIPCTAEQIPDVVNKVVSSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKAEDAREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
ARENELNKDILVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMKTHGQVRMTRLAQLLRDYFGHESETNEEQADEQTNDKTTSAPAQQLVELTEATIYEIDPMIGMGKVTPYT
FNHE

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=710241 NKW85_RS06205 WP_107584258.1 1322922..1325336(+) (recD2) [Staphylococcus simulans strain QB7]
TTGGAGAACCCTACATTGTTTGACTATTCGATGGTCAAAGGAACAGTAGAAGCAATCTTATTTCAAAATAAAGATAATTT
CTATACCGTATTAAAAGTAGATCCGATTGAAACCAATGAAGATTTTGATAATATGCCTACAATTGTGGGGTTCTTTCCTG
AAATTGCTGAAGGCGATGTTTATACCTTCAAAGGTCAAGCTGTGACACACCCTAGATACGGCAAACAATTAAAAGCTGAA
ACTTTCGAAAAAGAAGTACCGCAAACAAAAGATGCGATTATCAGTTACTTATCAAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCTGAAAATATCGTAAATACACTTGGTGAAAATACCATCAATAAAATTTTAGATGATCGTTCAGTCCTAGAAG
AAGTACCGAATTTATCTAAAAAGAAACAAAGCCAAATCGCAGATCAAATCTATAGTAACCAAGAAGTAGAAAAAATTATG
ATTAGACTTCATGATTTAGGCTTCGGTCCAAAATTAGCGATGAGCATCTATCAAGTTTATCAAAGTGATACCTTACAAAC
GATTGAGAAAAACCCGTATGATCTTGTCTATGATGTACGTGGTGTCGGTTTCCATAAAGCAGATACTTTAGCTAAGAATT
TAGGCATAGAATATAACGCCCCTGAACGCTTAAAAGCAGGTCTGCTTTATACGATAGAAGAAGAATGTATTAAACAAGGT
CATACATTTTTACCTAAAGATTATGTATTAGAAACTTCGTTAGAGATGTTAAGCAAGGGATATGACCAAACGATAGATGT
CAGTATGTTAGAAAAAGTGATACTTGAATTGACAGAAGAAAGTAAGTTGGTGGAAGCGGATGAAACACTTTCTATCCCAA
GCTTATATTATTCAGAAGTCAAAAGTGTGCAGAACCTGTATCGTATTGCGTCACATCAAGCTAAATTAGAGAATATTGAA
CAATCTGACTTACAAATCAATATTGGTGAAATCGAGGAAATGAATGGAGTCAACTACGCATCTTCTCAAAAAGAAGCACT
TGAAACAGCGATTAATTCAAAAGTCATGTTGCTGACAGGTGGTCCAGGTACCGGTAAAACAACGGTTATCAAAGGCATCG
TTGAACTCTATGCGGAAACGCATGGTTTATCCTTATCCTATGACGATTACCAAGAAGATGATTATCCGATAGCGCTTGCT
GCACCTACAGGACGTGCAGCCAAACGTTTACAAGAATCGACTGGACTTGAAGCAATGACCATCCATCGTTTAATCGGCTG
GAGTCAAGATACCAAGCCTGAAGATGTCTTAGAAAATGAAATTACTGCTAAGCTCATCATTATTGATGAAATGTCAATGG
TAGATACATGGTTGTTTCATCAGTTCTTAAATGCAGTGCCGATTGATGCACAAATCATTTTAGTCGGAGATGAAGACCAA
TTACCATCAGTCGGCCCAGGACAAGTGTTTAAAGATTTAATTGATGCGAAAGTCATTCCACGTGTTAATTTAACTGAAGT
CTACCGTCAACAAGATGGTTCTAGTATCATTGAACTCGCACATAAAATGAAATTAGGTCAGCCGATAGACATTACTGAGC
GATTCCACGATCGCAGCTTTATTCCTTGTACAGCTGAACAAATACCAGATGTAGTCAATAAAGTGGTGAGTTCTGCTGTT
AAAAAAGGCTACGATATGAGCGATATTCAAGTCTTGGCTCCGATGTATCGCGGCAGTGCCGGCATTAAGCGTTTAAATAA
AGTATTACAAGATATCTTGAATCCTAAAGCTGAAGATGCAAGAGAGATTGAGTTCGGAGAAGCGGTCTTTAGAAAGGGCG
ACAAAGTCTTACAACTTGTGAATCGTCCTAATGATAATATTTTCAATGGTGATATCGGTGTGATTGTCGGTATCTTCTGG
GCACGTGAAAACGAATTAAATAAAGATATACTTGTCGTTGATTTCGAAGGCAATGAAATTACATTTACCAAACAAGATAT
GATGGAGTTAACACATGCTTATTGTACTTCCATTCATAAAGCACAAGGTTCAGAGTTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTATCGCATGTTGCAGCGTCCGATTATCTATACAGGACTTACACGTGCCAAACAATCTTTAGTTTTTCTT
GGTGACAGCCAAGCCTTTGACATCGGTATGAAGACCCATGGCCAAGTTCGTATGACGAGACTCGCACAATTGCTCAGAGA
TTACTTCGGTCATGAGAGTGAAACAAATGAGGAACAAGCAGATGAACAAACAAATGACAAAACAACCTCAGCACCTGCAC
AACAACTCGTAGAATTAACAGAAGCAACGATTTATGAAATTGACCCGATGATTGGTATGGGTAAGGTCACACCTTATACT
TTTAATCATGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.162

92.04

0.48