Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   NMG48_RS11205 Genome accession   NZ_CP101416
Coordinates   2458238..2459347 (-) Length   369 a.a.
NCBI ID   WP_271251646.1    Uniprot ID   -
Organism   Pseudanabaena sp. Chao 1811     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2453238..2464347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMG48_RS11190 - 2454181..2456520 (-) 2340 WP_271251643.1 secretin N-terminal domain-containing protein -
  NMG48_RS11195 - 2456764..2457516 (-) 753 WP_271251644.1 hypothetical protein -
  NMG48_RS11200 - 2457518..2458231 (-) 714 WP_271251645.1 PilN domain-containing protein -
  NMG48_RS11205 pilM 2458238..2459347 (-) 1110 WP_271251646.1 type IV pilus assembly protein PilM Machinery gene
  NMG48_RS11210 - 2459823..2460362 (-) 540 WP_271251647.1 DUF4168 domain-containing protein -
  NMG48_RS11220 - 2462164..2462544 (+) 381 WP_271251648.1 FHA domain-containing protein -
  NMG48_RS11225 - 2462765..2463112 (+) 348 WP_126385280.1 FHA domain-containing protein -
  NMG48_RS11230 - 2463287..2463820 (+) 534 WP_271251649.1 hypothetical protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39838.68 Da        Isoelectric Point: 4.4856

>NTDB_id=710082 NMG48_RS11205 WP_271251646.1 2458238..2459347(-) (pilM) [Pseudanabaena sp. Chao 1811]
MFGLKFGGKSKKGIGIEITSEKVNLVQLRRKGQSSYKLVAHGSVELPEGIVEEGRILDPVALGESIRSLLAEKKVKAKKV
ATALPGRETVSRLIRLPAEIPDLELREMVLNQEASLYLPFPREDADVDYQKLGTSLDDDGIERIEILMVATPKEVTDSYM
QALEIAQLQVDVVEVSSFALIRAMHNELSRFSTLAEAVAIVDIEYEATEITVTVDGVPQFSRTFPIGTAQIQNAQLRAIN
LPPRRTTDMEMLSSTVVPVQSMDTASLAGGGNTPGDAAIMRVVGDLSDELRRSIDFYTSQSPGSDVVQLLIAGPGSCIGQ
LNEFFSQRLGIAASAIDPLTAIGVSVDGDIPIQDRMAMSVSLGLGLREV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=710082 NMG48_RS11205 WP_271251646.1 2458238..2459347(-) (pilM) [Pseudanabaena sp. Chao 1811]
ATGTTCGGCTTAAAGTTTGGCGGAAAGTCTAAAAAAGGCATCGGAATCGAAATTACTTCCGAGAAAGTTAATCTTGTTCA
ATTGCGCCGTAAGGGGCAATCTTCCTATAAGTTAGTGGCGCATGGTAGCGTTGAGCTTCCTGAAGGAATTGTTGAAGAAG
GGCGCATTCTCGATCCTGTAGCGCTGGGAGAAAGTATTCGCAGTTTGCTTGCAGAGAAAAAAGTAAAGGCCAAGAAAGTT
GCGACAGCTCTACCTGGTCGTGAGACGGTTAGTCGCTTGATTCGCTTACCTGCGGAGATTCCTGATTTGGAATTACGCGA
AATGGTACTCAATCAAGAAGCTAGCCTATACTTACCATTTCCCCGTGAAGATGCTGACGTGGACTATCAAAAGCTAGGTA
CATCATTGGATGATGACGGTATCGAGCGCATTGAAATCCTGATGGTGGCAACGCCTAAGGAAGTAACCGACAGCTATATG
CAAGCTCTAGAAATAGCGCAGCTACAGGTTGACGTTGTGGAAGTCAGTAGCTTTGCACTGATTCGAGCAATGCACAATGA
GCTATCAAGATTTAGTACTCTCGCGGAAGCTGTGGCGATCGTTGATATTGAGTATGAAGCAACAGAAATTACTGTAACTG
TTGATGGCGTACCGCAATTTTCTAGAACCTTCCCAATTGGCACAGCGCAAATTCAAAATGCTCAGTTACGGGCAATTAAT
CTGCCACCACGGCGGACAACGGATATGGAAATGCTGAGTTCAACGGTTGTACCTGTGCAATCTATGGACACTGCGAGCTT
AGCAGGTGGAGGCAATACTCCTGGTGATGCAGCAATCATGAGGGTTGTTGGTGACCTTTCCGATGAATTGCGCCGTTCTA
TTGATTTCTATACTAGTCAATCTCCTGGTTCAGATGTAGTTCAGCTATTGATTGCAGGCCCTGGCTCTTGTATTGGTCAG
TTGAACGAATTCTTTAGCCAACGCCTCGGTATTGCTGCAAGTGCGATCGATCCACTTACTGCTATAGGTGTATCCGTTGA
TGGTGATATTCCCATCCAAGATCGTATGGCGATGTCTGTGTCTCTAGGTTTAGGTTTGAGGGAGGTTTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(15-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

52.316

99.458

0.52