Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NM232_RS18800 Genome accession   NZ_CP101399
Coordinates   3524320..3525099 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain HM-7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519320..3530099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS18780 trmFO 3520024..3521328 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NM232_RS18785 xerC 3521391..3522308 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  NM232_RS18790 hslV 3522323..3522868 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NM232_RS18795 hslU 3522885..3524285 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NM232_RS18800 codY 3524320..3525099 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NM232_RS18805 flgB 3525387..3525776 (+) 390 WP_178930132.1 flagellar basal body rod protein FlgB -
  NM232_RS18810 flgC 3525776..3526228 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NM232_RS18815 fliE 3526240..3526557 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NM232_RS18820 fliF 3526608..3528200 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  NM232_RS18825 fliG 3528212..3529228 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  NM232_RS18830 fliH 3529221..3529985 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=710021 NM232_RS18800 WP_007499612.1 3524320..3525099(+) (codY) [Bacillus altitudinis strain HM-7]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=710021 NM232_RS18800 WP_007499612.1 3524320..3525099(+) (codY) [Bacillus altitudinis strain HM-7]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471