Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   PFZ59_RS01520 Genome accession   NZ_CP116393
Coordinates   308720..311053 (-) Length   777 a.a.
NCBI ID   WP_277697354.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 303720..316053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS01495 (PFZ59_01495) - 303750..304607 (-) 858 WP_347176382.1 helix-turn-helix transcriptional regulator -
  PFZ59_RS01500 (PFZ59_01500) msrB 304744..305682 (-) 939 WP_208582198.1 peptide-methionine (R)-S-oxide reductase MsrB -
  PFZ59_RS01505 (PFZ59_01505) - 305722..307251 (-) 1530 WP_277697760.1 AMP-binding protein -
  PFZ59_RS01510 (PFZ59_01510) trxA 307519..307833 (-) 315 WP_012775426.1 thioredoxin -
  PFZ59_RS01515 (PFZ59_01515) - 308043..308696 (-) 654 WP_208582202.1 GNAT family N-acetyltransferase -
  PFZ59_RS01520 (PFZ59_01520) mutS/mutS2 308720..311053 (-) 2334 WP_277697354.1 endonuclease MutS2 Machinery gene
  PFZ59_RS01525 (PFZ59_01525) - 311394..311942 (-) 549 WP_002935945.1 CvpA family protein -
  PFZ59_RS01530 (PFZ59_01530) - 311939..312250 (-) 312 WP_002935948.1 hypothetical protein -
  PFZ59_RS01535 (PFZ59_01535) treR 312308..313021 (-) 714 WP_208582205.1 trehalose operon repressor Regulator
  PFZ59_RS01540 (PFZ59_01540) treP 313254..315248 (+) 1995 WP_277697355.1 PTS system trehalose-specific EIIBC component -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87617.27 Da        Isoelectric Point: 6.4818

>NTDB_id=709818 PFZ59_RS01520 WP_277697354.1 308720..311053(-) (mutS/mutS2) [Streptococcus suis strain SS/UPM/MY/F001]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFSMSATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKTLLDFYSNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFARDHQAVVPKLSEKQDIALLNVRHPLIAEPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=709818 PFZ59_RS01520 WP_277697354.1 308720..311053(-) (mutS/mutS2) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTTTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCACCGTATCCAACAAGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTATGTCAGCTACTAGCGACATCGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAGCTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAAACTCTCTTGGATTTTTATAG
TAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAAGGCTCCC
TCCAGTCCATCAATGATGCGGGGTTTGTAGAGGATTTTGCCTCTGAAAAACTAGCCCGTATTCGAAGAAAAATCCGTGAA
GCTGAAGACCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGTGACATGCTGTCCGATAGCATTTTGGCAAG
CCGTAATGGGCGAAATGTCCTTCCTGTCAAAAATACCTATCGCAATAAGATTGCGGGGGTTGTCCATGACATTTCTGCAT
CTGGCTCGACTGTGTATATTGAACCGCGGGCAGTGGTGACCCTGAACGAGGAAATCAGTCACCTCCGTGCAGAAGAACGC
CACGAGCTCAACCGTATCTTGCAGGAATTGTCGGATATGCTCCGTCCGCATAGTGGCGTGATTCGTAACAATGCATGGCT
TATCGGACATATTGATTTCGTCCGTGCCAAGCATCTCTTTGCGCGTGATCATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCCCTTCTTAATGTTCGCCATCCGCTCATTGCAGAGCCTGTACCAAATGACCTGTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTTAAGACCTTGGGATTGACCCATCTGAT
GGCTCAGTCTGGTTTGCCTATCTTGGCTGACAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGATATTGGGG
ATGAACAGTCGATTGAGCAGAGTTTATCAACCTTCTCCAGTCACATGACCCACACGGTGCAGATTTTAGCGGAGGCGGAT
CAAGATTCTCTTATTCTTTTCGATGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCTTTGGCAATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCAACCACCCACTACCCTGAGCTTAAGGCCTACGGTATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAATTTGATAGCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCCCGCCGTCTTGGACTATCTGATATCATCATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGCCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGCGGGAAAATGAG
CTTAACAAGGCACGCTTAGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGACATTCTTAAAAATCTTCA
TGCTGCAGCCAGTCTTAAGCCCCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCACCTGAAGTGGTAGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCTTAT
GGACAACGTGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAAAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAATTTATC
GACCAAGCCCTTCTCAACAATCTGGCACAAGTCGACATTGTCCACGGTATTGGTACAGGGGTTATCCGAGAAGGGGTGAC
AAAGTACCTTCGCCGCAACAAGCAAGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGCTCAGGCTGTACTATTG
TGACGTTTAAATAG

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)

Smr domain (Smr)

(702-777)

MutS domain V (MutS_V)

(324-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.52

100

0.403