Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PFZ59_RS00460 Genome accession   NZ_CP116393
Coordinates   83237..84025 (-) Length   262 a.a.
NCBI ID   WP_172078852.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 78237..89025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS00435 (PFZ59_00435) gatA 79073..80539 (-) 1467 WP_024408529.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  PFZ59_RS00440 (PFZ59_00440) gatC 80539..80841 (-) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  PFZ59_RS00445 (PFZ59_00445) - 81059..81733 (-) 675 WP_012774968.1 hydrolase -
  PFZ59_RS00450 (PFZ59_00450) rplS 81921..82268 (-) 348 WP_011921928.1 50S ribosomal protein L19 -
  PFZ59_RS00455 (PFZ59_00455) - 82684..83235 (-) 552 WP_277697754.1 isochorismatase family cysteine hydrolase -
  PFZ59_RS00460 (PFZ59_00460) codY 83237..84025 (-) 789 WP_172078852.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PFZ59_RS00465 (PFZ59_00465) - 84177..85391 (-) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  PFZ59_RS00470 (PFZ59_00470) - 85546..85998 (+) 453 WP_277697243.1 universal stress protein -
  PFZ59_RS00475 (PFZ59_00475) - 86014..87379 (-) 1366 Protein_80 Cof-type HAD-IIB family hydrolase -
  PFZ59_RS00480 (PFZ59_00480) - 87449..88408 (+) 960 WP_277697244.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29434.49 Da        Isoelectric Point: 4.5697

>NTDB_id=709816 PFZ59_RS00460 WP_172078852.1 83237..84025(-) (codY) [Streptococcus suis strain SS/UPM/MY/F001]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEEYV
KAVVQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=709816 PFZ59_RS00460 WP_172078852.1 83237..84025(-) (codY) [Streptococcus suis strain SS/UPM/MY/F001]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGAATATGTA
AAAGCAGTTGTGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATCCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGCGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.924

100

0.599
  codY Bacillus subtilis subsp. subtilis str. 168

53.252

93.893

0.5