Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   PIB33_RS08030 Genome accession   NZ_CP116391
Coordinates   1532679..1533128 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain GXD-20     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527679..1538128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS07990 (PIB33_07990) ctaE 1527698..1528321 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  PIB33_RS07995 (PIB33_07995) ctaF 1528324..1528656 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  PIB33_RS08000 (PIB33_08000) ctaG 1528683..1529576 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  PIB33_RS08005 (PIB33_08005) ylbA 1529608..1529970 (-) 363 WP_003232238.1 YugN family protein -
  PIB33_RS08010 (PIB33_08010) ylbB 1530110..1530556 (+) 447 WP_003221362.1 CBS domain-containing protein -
  PIB33_RS08015 (PIB33_08015) ylbC 1530640..1531680 (+) 1041 WP_032721504.1 CAP domain-containing protein -
  PIB33_RS08020 (PIB33_08020) ylbD 1531910..1532308 (+) 399 WP_003232233.1 YlbD family protein -
  PIB33_RS08025 (PIB33_08025) ylbE 1532324..1532563 (+) 240 WP_003232231.1 YlbE-like family protein -
  PIB33_RS08030 (PIB33_08030) ylbF 1532679..1533128 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PIB33_RS08035 (PIB33_08035) ylbG 1533183..1533455 (+) 273 WP_009967171.1 YlbG family protein -
  PIB33_RS08040 (PIB33_08040) rsmD 1533778..1534332 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PIB33_RS08045 (PIB33_08045) coaD 1534337..1534822 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PIB33_RS08050 (PIB33_08050) spoVV 1534833..1536059 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  PIB33_RS08055 (PIB33_08055) ylbK 1536240..1537022 (+) 783 WP_003232221.1 patatin family protein -
  PIB33_RS08060 (PIB33_08060) sepM 1537024..1538049 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=709719 PIB33_RS08030 WP_003221370.1 1532679..1533128(+) (ylbF) [Bacillus subtilis strain GXD-20]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=709719 PIB33_RS08030 WP_003221370.1 1532679..1533128(+) (ylbF) [Bacillus subtilis strain GXD-20]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1