Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   PGH47_RS15665 Genome accession   NZ_CP116353
Coordinates   3555610..3557859 (-) Length   749 a.a.
NCBI ID   WP_271663951.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS 31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3550610..3562859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH47_RS15650 (PGH47_15650) - 3550931..3551170 (+) 240 WP_030955126.1 heavy-metal-associated domain-containing protein -
  PGH47_RS15655 (PGH47_15655) - 3551179..3553476 (+) 2298 WP_271663950.1 heavy metal translocating P-type ATPase -
  PGH47_RS15660 (PGH47_15660) - 3554054..3555343 (-) 1290 WP_126899815.1 citrate synthase -
  PGH47_RS15665 (PGH47_15665) recD/recD2/recDB 3555610..3557859 (-) 2250 WP_271663951.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PGH47_RS15670 (PGH47_15670) - 3557924..3558289 (-) 366 WP_271663952.1 hypothetical protein -
  PGH47_RS15675 (PGH47_15675) - 3558413..3559003 (-) 591 WP_271663953.1 TetR/AcrR family transcriptional regulator -
  PGH47_RS15680 (PGH47_15680) - 3559120..3559683 (+) 564 WP_271663954.1 hypothetical protein -
  PGH47_RS15685 (PGH47_15685) - 3559845..3560864 (+) 1020 WP_271663955.1 LacI family DNA-binding transcriptional regulator -
  PGH47_RS15690 (PGH47_15690) - 3560861..3562393 (+) 1533 WP_271663956.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 749 a.a.        Molecular weight: 80927.63 Da        Isoelectric Point: 6.6506

>NTDB_id=709525 PGH47_RS15665 WP_271663951.1 3555610..3557859(-) (recD/recD2/recDB) [Streptomyces sp. HUAS 31]
MSNQAGSGERRLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGALLGAQVGESLRMEGRWGSHPQYGKQFTVE
NYTTLLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLKIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKEVM
LFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADKIAQSVGIPHDSPERVKAGLQYALSQATDQGN
CYLPEEQLIADAVKLLQVDTGLVIECLAELAQIPEDGSDPGVVREKVPGPDGGAEPVTAVYLVPFHRAELSLAAQLLRLL
RTDEDRMPGFHDVAWDKALGWLKGRTGAELAPEQEAAVRLALTEKVAVLTGGPGCGKSFTVRSIVELARAKKARVVLAAP
TGRAAKRLAELTGAEASTVHRLLELKPGGDAAYDRDRPLQADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQLP
SVGAGEVLRDLLAVGSPIPAVRLTRVFRQAQQSGVVTNAHRINAGQHPVTDGMKDFFLFVEDETEEAGRLTVDVAARRIP
AKFGLDPRRDIQVLAPMHRGPAGAGTLNGLLQQAITPGRPELPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVGVV
TSLDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKQLVVLV
GSRKAIGQAVRTVSAGRRCTALDFRLAGS

Nucleotide


Download         Length: 2250 bp        

>NTDB_id=709525 PGH47_RS15665 WP_271663951.1 3555610..3557859(-) (recD/recD2/recDB) [Streptomyces sp. HUAS 31]
ATGTCCAATCAGGCGGGGAGCGGCGAGCGCCGACTTGCGGTGCTCGAAGGCGTCCTGGAACGGATCACGTACGCCAACGA
GGAGAACGGCTACACGGTCGCCCGGGTCGACACCGGAAGAGGCGGGGGCGATCTGCTCACGGTCGTCGGCGCGCTGCTCG
GCGCCCAGGTCGGCGAGTCCCTGCGGATGGAGGGGCGTTGGGGCTCGCACCCGCAATACGGGAAGCAGTTCACCGTCGAG
AACTACACGACCCTGCTCCCGGCCACCGTCCAGGGCATCCGCCGCTACCTGGGCTCCGGGCTGGTCAAGGGCATCGGGCC
GGTCTTCGCCGACCGCATCACCCAGCACTTCGGGCTGGACACCCTGAAGATCATCGAGGAGGAGCCCAAGCGGCTCATCG
AGGTCCCCGGACTCGGCCCCAAGCGCACGAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATG
CTCTTCCTCCAGACCGTCGAGGTGTCCACCTCCATCGCCGTGCGGATCTACAAGAAGTACGGCGACGCCTCCATCTCCGT
CGTGAAGAACCAGCCCTACCGGCTCGCCTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCCAGTCCG
TCGGCATCCCGCACGACAGCCCGGAGCGCGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGGCCACCGACCAGGGCAAC
TGCTACCTCCCCGAGGAACAGCTGATCGCCGACGCGGTCAAGCTCCTCCAGGTCGACACCGGGCTCGTCATCGAGTGCCT
CGCCGAGCTCGCGCAGATCCCCGAGGACGGCTCGGACCCGGGAGTCGTACGGGAGAAGGTGCCCGGTCCCGACGGCGGCG
CGGAGCCCGTGACGGCCGTCTATCTCGTCCCCTTCCACCGGGCCGAACTCTCCCTCGCCGCCCAGCTGTTGCGGCTGCTG
CGTACCGACGAGGACCGGATGCCGGGGTTCCACGACGTCGCCTGGGACAAGGCGCTGGGCTGGCTGAAGGGCCGTACTGG
CGCGGAGCTCGCCCCCGAGCAGGAGGCGGCCGTCAGGCTGGCCCTGACCGAGAAGGTCGCCGTGCTGACCGGCGGTCCCG
GCTGCGGCAAGTCCTTCACGGTCCGCTCGATCGTCGAGCTGGCGCGGGCGAAGAAGGCACGCGTCGTCCTCGCCGCCCCC
ACCGGCCGCGCCGCCAAGCGCCTCGCCGAACTGACCGGCGCCGAGGCATCCACCGTCCACCGCCTGCTGGAGCTCAAGCC
CGGCGGCGACGCTGCCTACGACAGGGACCGCCCGCTCCAGGCCGACCTGGTGGTGGTCGACGAGGCGTCCATGCTGGACC
TGTTGCTCGCCAACAAGCTGGTGAAGGCCGTGCCGCCGGGCGCGCACCTGCTGTTCGTCGGGGACGTCGACCAGTTGCCG
AGCGTCGGCGCGGGCGAGGTGCTCAGGGACCTCCTCGCCGTCGGCAGCCCGATCCCCGCCGTGCGCCTGACCCGTGTGTT
CCGGCAGGCCCAGCAGTCCGGCGTGGTGACCAACGCGCACCGGATCAACGCCGGACAGCACCCCGTCACCGACGGCATGA
AGGACTTCTTCCTCTTCGTCGAGGACGAGACGGAGGAGGCCGGCAGGCTCACCGTGGATGTGGCGGCGCGTCGGATTCCG
GCCAAGTTCGGGCTCGACCCGCGCCGGGACATCCAGGTGCTGGCCCCCATGCACCGCGGCCCGGCCGGCGCGGGAACGCT
GAACGGCCTGCTCCAGCAGGCCATCACACCCGGGCGCCCCGAGCTGCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGTG
TCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGGGAGAACGGTGTCTTCAACGGCACCGTGGGCGTGGTC
ACCTCGCTCGACCCGGTCGACCAGCGCCTGACGGTGCTGACGGACGAGGACGAGGAGGTTCCGTACGAATTCGACGAACT
GGACGAACTCGCGCACGCGTACGCGGTGACGATCCACCGTTCACAGGGAAGTGAATATCCCGCAGTGGTGATCCCCGTCA
CGACGGGAGCATGGATGATGCTTCAGCGGAACCTGCTCTACACGGCGGTCACCAGGGCAAAGCAGTTGGTCGTCCTCGTG
GGTTCGCGCAAGGCCATCGGTCAGGCGGTGCGCACGGTCTCGGCCGGGCGCCGCTGCACGGCACTCGACTTCCGGCTCGC
GGGCTCCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(102-151)

AAA domain (AAA_30)

(349-528)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(587-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-242)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.611

100

0.362