Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NMT99_RS08680 Genome accession   NZ_CP101290
Coordinates   1666098..1666877 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain LjM2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661098..1671877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS08660 trmFO 1661791..1663098 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NMT99_RS08665 xerC 1663166..1664080 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  NMT99_RS08670 clpQ 1664093..1664638 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NMT99_RS08675 hslU 1664655..1666058 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  NMT99_RS08680 codY 1666098..1666877 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NMT99_RS08685 flgB 1667257..1667646 (+) 390 WP_029726489.1 flagellar basal body rod protein FlgB -
  NMT99_RS08690 flgC 1667646..1668098 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  NMT99_RS08695 fliE 1668109..1668429 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NMT99_RS08700 fliF 1668475..1670085 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  NMT99_RS08705 fliG 1670098..1671114 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NMT99_RS08710 fliH 1671107..1671859 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=709470 NMT99_RS08680 WP_003220850.1 1666098..1666877(+) (codY) [Bacillus subtilis strain LjM2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=709470 NMT99_RS08680 WP_003220850.1 1666098..1666877(+) (codY) [Bacillus subtilis strain LjM2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTAGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467