Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PHA52_RS26195 Genome accession   NZ_CP116237
Coordinates   5674051..5674575 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain MPAO1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5669051..5679575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA52_RS26180 (PHA52_26160) aroB 5670167..5671273 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  PHA52_RS26185 (PHA52_26165) aroK 5671323..5671841 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PHA52_RS26190 (PHA52_26170) pilQ 5671853..5673997 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  PHA52_RS26195 (PHA52_26175) comL/pilP 5674051..5674575 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PHA52_RS26200 (PHA52_26180) pilO 5674572..5675195 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PHA52_RS26205 (PHA52_26185) pilN 5675192..5675788 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PHA52_RS26210 (PHA52_26190) pilM 5675788..5676852 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PHA52_RS26215 (PHA52_26195) - 5677037..5679505 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=709320 PHA52_RS26195 WP_003095836.1 5674051..5674575(-) (comL/pilP) [Pseudomonas aeruginosa strain MPAO1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=709320 PHA52_RS26195 WP_003095836.1 5674051..5674575(-) (comL/pilP) [Pseudomonas aeruginosa strain MPAO1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362