Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H7680_RS01085 Genome accession   NZ_AP023394
Coordinates   188896..190185 (-) Length   429 a.a.
NCBI ID   WP_003056985.1    Uniprot ID   A0ABU0A931
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 183896..195185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS01050 (SDSE159_01610) - 184504..186081 (+) 1578 WP_003059548.1 ABC transporter ATP-binding protein -
  H7680_RS10575 - 186101..186440 (+) 340 Protein_163 hypothetical protein -
  H7680_RS01060 (SDSE159_01640) - 186545..187362 (+) 818 Protein_164 aminoglycoside 6-adenylyltransferase -
  H7680_RS01065 (SDSE159_01650) - 187385..187945 (+) 561 WP_003055053.1 histidine phosphatase family protein -
  H7680_RS01070 (SDSE159_01660) - 187963..188475 (+) 513 WP_003055049.1 GNAT family N-acetyltransferase -
  H7680_RS01085 (SDSE159_01670) rarA 188896..190185 (-) 1290 WP_003056985.1 replication-associated recombination protein A Machinery gene
  H7680_RS01090 (SDSE159_01680) - 190218..190784 (-) 567 WP_003056988.1 aminodeoxychorismate/anthranilate synthase component II -
  H7680_RS01095 (SDSE159_01690) pabB 190817..192574 (-) 1758 WP_041784687.1 aminodeoxychorismate synthase component I -
  H7680_RS01100 (SDSE159_01700) - 192775..193245 (+) 471 WP_003056995.1 DUF3013 family protein -
  H7680_RS01105 (SDSE159_01710) prmA 193316..194269 (+) 954 WP_003056998.1 50S ribosomal protein L11 methyltransferase -
  H7680_RS01110 (SDSE159_01720) - 194269..195027 (+) 759 WP_003056992.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 429 a.a.        Molecular weight: 47270.04 Da        Isoelectric Point: 7.3658

>NTDB_id=70908 H7680_RS01085 WP_003056985.1 188896..190185(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MPDHLALRMRPKTISEVIGQEHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKRALR
TAITDKERGFAFDVMLDDNALDFIATATNGDLRSAYHSLDLAVMSTKPDSDGKRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKAIRGSDVNASLHYAARLVEAGDLPSLARRLIVIAYEDIGLANPDAQVHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALSDLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPKKWVKQQYLPDKLIGKQYFSP
NETGKYERALGANKERIDKLSSHSTGIPK

Nucleotide


Download         Length: 1290 bp        

>NTDB_id=70908 H7680_RS01085 WP_003056985.1 188896..190185(-) (rarA) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
ATGCCCGATCATTTAGCGCTCCGCATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAGAACATCTTGTTGGAGAAGG
TAAAATCATCCGTCGCATGGTGGAAGCCAATATGCTATCGTCCATGATTCTCTATGGTCCTCCAGGAATCGGTAAAACTT
CCATTGCTAGCGCTATTGCAGGTACCACCAAGTATGCCTTTCGGACCTTTAATGCCACCGTTGATAGCAAAAAACGTCTC
CAAGAAATTGCTGAGGAGGCCAAATTTTCAGGAGGATTGGTATTGCTACTAGACGAGATTCATCGGCTAGACAAAACCAA
ACAAGACTTCCTGCTCCCCTTACTGGAAAATGGTACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCAGCTATCAGAAGCAGGGTCCAGATTTTTGAACTGGAACCTCTCTCCAACGAGGATATCAAGCGTGCCCTTCGA
ACTGCCATTACCGATAAAGAAAGAGGCTTTGCCTTTGACGTGATGCTTGACGATAATGCTCTTGATTTTATCGCAACAGC
CACCAATGGCGATTTACGCTCAGCCTATCACTCCTTGGATCTAGCAGTCATGTCTACAAAGCCAGATAGCGATGGGAAGC
GACACATCACCTTAGACACTGTTGAAAATTCCTTGCAGCGCAGCTATATTACCATGGATAAAGATGGCGACGGGCATTAT
GATGTCCTATCTGCCCTCCAAAAAGCTATTCGTGGTTCCGATGTCAATGCCAGTCTTCACTATGCGGCACGATTAGTGGA
AGCAGGCGATTTACCAAGCCTAGCTAGGCGGTTGATTGTGATTGCTTATGAAGATATTGGTTTGGCTAATCCTGACGCCC
AAGTCCATACCGTTACCGCACTTGATGCCGCTCAGAAAATCGGCTTTCCAGAAGCACGTATTCTAATTGCTAACGTGGTC
ATTGATTTGGCCTTATCCCCAAAATCCAACTCAGCTTATCTGGCCATGGATGCTGCCTTAAGCGATTTGAGAACATCAGG
AAACCTTCCTATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGGAATGCCAAAGATTACCTTT
ACCCCCACGCTTACCCTAAAAAATGGGTCAAACAACAGTACCTGCCAGATAAATTAATCGGTAAACAGTATTTTTCCCCA
AACGAAACAGGAAAATATGAACGCGCCCTGGGTGCCAACAAAGAGCGTATTGACAAGCTTTCTAGTCACTCAACCGGTAT
CCCAAAGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.671

97.203

0.59

Multiple sequence alignment