Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NLJ82_RS18530 Genome accession   NZ_CP101135
Coordinates   3609369..3610148 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus paranthracis strain Bt C4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3604369..3615148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLJ82_RS18505 (NLJ82_18505) uppS 3605117..3605893 (-) 777 WP_000971300.1 isoprenyl transferase -
  NLJ82_RS18510 (NLJ82_18510) frr 3605979..3606536 (-) 558 WP_000531500.1 ribosome recycling factor -
  NLJ82_RS18515 (NLJ82_18515) pyrH 3606539..3607261 (-) 723 WP_000042663.1 UMP kinase -
  NLJ82_RS18520 (NLJ82_18520) tsf 3607328..3608215 (-) 888 WP_001018580.1 translation elongation factor Ts -
  NLJ82_RS18525 (NLJ82_18525) rpsB 3608319..3609020 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  NLJ82_RS18530 (NLJ82_18530) codY 3609369..3610148 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NLJ82_RS18535 (NLJ82_18535) hslU 3610226..3611617 (-) 1392 WP_000550081.1 ATP-dependent protease ATPase subunit HslU -
  NLJ82_RS18540 (NLJ82_18540) hslV 3611640..3612182 (-) 543 WP_000526273.1 ATP-dependent protease proteolytic subunit HslV -
  NLJ82_RS18545 (NLJ82_18545) xerC 3612225..3613124 (-) 900 WP_001101228.1 tyrosine recombinase XerC -
  NLJ82_RS18550 (NLJ82_18550) trmFO 3613190..3614494 (-) 1305 WP_012644562.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=709035 NLJ82_RS18530 WP_000421288.1 3609369..3610148(-) (codY) [Bacillus paranthracis strain Bt C4]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=709035 NLJ82_RS18530 WP_000421288.1 3609369..3610148(-) (codY) [Bacillus paranthracis strain Bt C4]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCGCGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459