Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NL113_RS17290 Genome accession   NZ_CP101130
Coordinates   3469585..3471951 (+) Length   788 a.a.
NCBI ID   WP_034326475.1    Uniprot ID   A0A7Y8RYE5
Organism   Bacillus sp. KRF7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3464585..3476951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS17270 cymR 3465965..3466381 (+) 417 WP_006637799.1 cysteine metabolism transcriptional regulator CymR -
  NL113_RS17275 - 3466401..3467555 (+) 1155 WP_006637798.1 cysteine desulfurase family protein -
  NL113_RS17280 mnmA 3467648..3468766 (+) 1119 WP_006637797.1 tRNA 2-thiouridine(34) synthase MnmA -
  NL113_RS17285 - 3468859..3469509 (+) 651 WP_006637796.1 lipopolysaccharide assembly protein LapB -
  NL113_RS17290 recD2 3469585..3471951 (+) 2367 WP_034326475.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NL113_RS17295 - 3472040..3472501 (+) 462 WP_006637794.1 PRC-barrel domain-containing protein -
  NL113_RS17300 - 3472519..3472710 (+) 192 WP_006637793.1 hypothetical protein -
  NL113_RS17305 - 3472726..3472857 (+) 132 WP_006637792.1 DUF3918 family protein -
  NL113_RS17310 - 3472952..3474010 (+) 1059 WP_006637791.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88817.23 Da        Isoelectric Point: 4.9345

>NTDB_id=708982 NL113_RS17290 WP_034326475.1 3469585..3471951(+) (recD2) [Bacillus sp. KRF7]
MEEASFLKGTVTAVIYHNETNLYTVLKVKVQETSESFDEKTVSVTGYFPAIFEDETYTFYGKTASHPKFGLQFQADHFKK
EVPTTKEGVIQYLSSDLFEGIGKKTAEEIVKKLGEGAINKILGDASVLYDVPKLSKKKADKLAALLQQHQGLEQIMISLS
EFGFGPQLSMKIYQVYESETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGRHAERIKAAILYTVEATCLQEGHTYI
ETKQLIIETQKLLNQSSDEEKVTEMDVADAIISLGEQKDLFIEDDRCYYPSLYYAEQSFAKRVQTIAEQTEYDDQFPESE
FLLALGELEERMQVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDETFPFVLAAP
TGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIDGRLLIVDETSMLDIWLANQLFKAIPNRIQVIMVGDEDQLP
SVGPGQVLRDLLASNLIPSVRLTDIYRQAEGSSIVELAHDMKKGRLPENLTAPTKDRSFIRCRQQQIKEVVEKVVKNALQ
KGYSARDIQVLAPMYRGPAGINELNALLQDILNPPKPKGRELKYGDVVYRTGDKVLQLVNQPEHHVFNGDMGEIVSIFYA
KENTEKEDMAVVSFDGNEITITKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKKFLILCG
EEEALEWGIKNRESSERQTSLQRRLHQAVHEEDEELLALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=708982 NL113_RS17290 WP_034326475.1 3469585..3471951(+) (recD2) [Bacillus sp. KRF7]
ATGGAAGAAGCATCCTTTCTGAAAGGAACGGTAACGGCCGTCATCTATCATAATGAAACAAACCTCTATACCGTACTGAA
AGTGAAGGTTCAGGAAACATCTGAATCATTTGATGAAAAAACCGTTTCTGTCACAGGGTACTTTCCGGCAATCTTTGAAG
ATGAAACGTATACTTTCTACGGAAAAACCGCCTCCCATCCGAAGTTTGGCCTGCAATTTCAAGCAGATCATTTTAAAAAA
GAAGTTCCGACGACAAAAGAAGGCGTCATCCAATATTTGTCGAGCGACCTATTTGAAGGCATCGGCAAAAAAACGGCGGA
AGAAATCGTCAAAAAGCTCGGGGAAGGCGCGATCAACAAGATTTTGGGAGACGCTTCCGTGCTTTATGATGTGCCAAAGC
TTTCAAAGAAAAAAGCGGATAAGCTTGCCGCTCTTCTTCAGCAGCATCAGGGGCTTGAGCAGATCATGATTTCCTTGAGC
GAGTTTGGCTTCGGGCCGCAGCTGTCCATGAAAATTTATCAAGTATATGAATCGGAAACGCTGGATAAAATCCGTGAAAA
TCCGTATCAGCTCGTCAAGGATGTCGAAGGAATCGGCTTTATTAAAGCGGATGAACTCGGCGGCAGAATGGGGATTTCCG
GCAGGCATGCGGAACGGATCAAAGCGGCGATTTTATATACGGTTGAAGCGACATGCCTTCAGGAAGGGCATACTTACATA
GAAACAAAACAGCTCATTATCGAGACGCAGAAGCTGCTGAACCAGTCGTCTGACGAAGAAAAAGTCACGGAAATGGATGT
GGCGGATGCGATCATTTCCCTAGGTGAACAGAAAGATCTGTTTATTGAAGACGACAGGTGCTATTATCCGTCGCTTTACT
ATGCTGAACAAAGCTTTGCCAAAAGAGTCCAGACGATCGCGGAACAAACCGAATACGATGACCAGTTTCCCGAATCGGAA
TTTTTGCTTGCTTTAGGCGAGCTTGAAGAACGAATGCAAGTCCAATACGCGCCAAGCCAAAAAGAAGCCATTCAAAAAGC
GCTGATGTCCCCGATGCTGCTTTTGACCGGAGGACCCGGCACGGGAAAAACGACAGTCATCAGGGGAATCGTCGAATTGT
ACAGCGAGCTGCACGGTTTAAGTTTAAATCCGGCTGATTATAAAAAGGATGAAACCTTTCCGTTTGTACTGGCTGCGCCG
ACGGGTAGAGCGGCCAAGCGGATGAGCGAATCGACGGGTCTTCCCGCTGTGACGATCCACAGGCTCCTCGGCTGGAACGG
AGCGGAAGGTTTTACACATGACGAAGATAACCCGATCGATGGGCGGCTGCTGATTGTCGATGAGACGAGCATGCTTGATA
TATGGCTTGCCAACCAATTATTCAAAGCGATTCCAAACCGGATTCAGGTTATCATGGTGGGAGATGAAGACCAGCTCCCG
TCTGTCGGACCGGGACAGGTGCTCAGGGATCTCCTTGCATCAAATCTCATTCCCTCGGTCAGATTAACCGATATTTACCG
GCAGGCAGAAGGCTCTTCAATCGTGGAATTGGCGCATGATATGAAAAAGGGGAGGCTGCCGGAAAATTTGACGGCCCCGA
CTAAAGACCGCTCATTTATCCGCTGCCGTCAGCAGCAAATTAAAGAAGTGGTTGAAAAAGTCGTCAAAAACGCATTGCAA
AAGGGCTATTCCGCCCGGGACATTCAAGTGCTTGCCCCGATGTACAGGGGTCCGGCGGGAATCAATGAATTAAATGCGCT
TTTGCAGGACATCCTCAATCCGCCAAAACCAAAAGGCAGGGAGCTAAAGTACGGGGATGTCGTCTACAGGACGGGCGACA
AGGTGCTCCAGCTTGTCAATCAGCCTGAGCATCATGTGTTCAACGGTGATATGGGCGAAATTGTTTCTATTTTTTACGCG
AAGGAAAATACGGAAAAAGAAGACATGGCTGTCGTTTCTTTTGACGGCAACGAGATCACAATTACAAAAAAAGATTTCAA
TCAGTTTACACATGCTTACTGCTGTTCGATTCACAAATCGCAGGGCAGCGAATTTCCGATTGTCATTCTTCCCGTCGTCA
AAAGCTATTACCGGATGCTGAGAAGAAATTTGCTTTATACGGCCATTACAAGAAGCAAAAAATTTCTCATTTTGTGCGGT
GAAGAGGAAGCGCTTGAATGGGGCATAAAAAATAGAGAATCCTCTGAAAGGCAGACATCTTTGCAGAGAAGGCTGCATCA
GGCGGTACATGAAGAGGACGAGGAGCTGCTGGCGCTCCAAAAAGAACTGCCTTTCAGCGTGTATGACGCCAACATCGGTA
TGGAAGGCATCACACCTTTTGACTTTATGGAAAAAGAGGCGGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(149-239)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-652)

AAA domain (AAA_30)

(336-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8RYE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

82.383

100

0.825