Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NL113_RS17210 Genome accession   NZ_CP101130
Coordinates   3451508..3453868 (+) Length   786 a.a.
NCBI ID   WP_006637809.1    Uniprot ID   -
Organism   Bacillus sp. KRF7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3446508..3458868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS17190 - 3447801..3448097 (+) 297 WP_006637813.1 post-transcriptional regulator -
  NL113_RS17195 secDF 3448137..3450362 (+) 2226 WP_006637812.1 protein translocase subunit SecDF -
  NL113_RS17200 - 3450494..3451000 (+) 507 WP_006637811.1 cation:proton antiporter regulatory subunit -
  NL113_RS17205 - 3451147..3451440 (+) 294 WP_006637810.1 lipopolysaccharide assembly LapA domain-containing protein -
  NL113_RS17210 recJ 3451508..3453868 (+) 2361 WP_006637809.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NL113_RS17215 - 3453874..3454386 (+) 513 WP_006637808.1 adenine phosphoribosyltransferase -
  NL113_RS17220 - 3454554..3456755 (+) 2202 WP_006637807.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NL113_RS17225 dtd 3456768..3457211 (+) 444 WP_006637806.1 D-aminoacyl-tRNA deacylase -
  NL113_RS17230 - 3457240..3458817 (-) 1578 WP_006637805.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88354.91 Da        Isoelectric Point: 4.9109

>NTDB_id=708981 NL113_RS17210 WP_006637809.1 3451508..3453868(+) (recJ) [Bacillus sp. KRF7]
MLASKMRWDVQTPDKEKVESLSGQLGITPLAASLLVMRGCDTADQAASFLHGKDVGFHDPYLLKDMEKAVRRIEQAISEH
EHIMIYGDYDADGVTSTTVLLQTLKKFSAQVDFYIPDRFKEGYGPNEAAFRQIKDQGYSLIITVDTGIAGVHEADVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCSYPFKELAGVGVAFKLAHALSGDVPEELLDLCAIGTIADLVPLHDENRHI
AKLGMAQFRKTKRPGLIALTKIAGAEIQNANEETIGFQIAPRINAVGRIDQADPAVHLLNTEDETEAIELAEEINSLNKE
RQKIVNQITEEAVEMIEEQGLDQPVIVAARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNQDDVGALRERINRQAEAVLTEEDFIPVQEVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVEDVEIEEARKIGANQNHLKLMLADGQAKLDCIGFYKGEIEESVVPGAKISLVGELSINEWNNRKKPQLMIKDA
AVKEWQLFDFRGKRTWEEQILKLDPEKRVFICFREESRAKLAGTGLRDELILIRGEEDAVRIDLHNRYAVFIDTPQSIDI
FDHVINGKRLERIYLIFTQTDDHFFSTFPTRDYFKWYYAFLLKRGSFDLVKYGAELAKHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYGAAKRDLTDSETYRKKQRLIELEQKLLYSSADELKQWLSKRMDESSEAYESMRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=708981 NL113_RS17210 WP_006637809.1 3451508..3453868(+) (recJ) [Bacillus sp. KRF7]
ATGTTAGCGTCAAAAATGCGTTGGGATGTGCAAACACCCGACAAAGAAAAGGTGGAGTCGCTCTCCGGACAATTGGGTAT
CACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGCTGCGATACAGCTGATCAAGCAGCTTCGTTTTTGCACGGCAAGG
ATGTCGGTTTTCATGACCCATATCTGCTTAAAGATATGGAAAAAGCAGTTCGGCGAATCGAACAGGCTATTTCAGAACAT
GAACATATCATGATTTATGGTGATTATGATGCGGACGGTGTGACAAGCACGACCGTTCTTTTGCAGACTTTAAAAAAATT
TTCAGCACAAGTCGATTTCTATATACCCGACCGTTTTAAAGAAGGCTACGGCCCTAATGAAGCGGCATTCCGTCAAATAA
AAGATCAGGGATATTCGTTGATCATCACTGTGGATACTGGGATTGCCGGCGTACATGAAGCAGATGTCGCCAAGGAGCTC
GGCATCGATCTGATTATTACAGACCACCACGAGCCCGGTCCGGTATTGCCTGACGCGTATGCGATCATCCATCCGAAGCA
GCCCGGCTGCAGCTACCCTTTTAAAGAACTGGCGGGAGTCGGGGTGGCTTTTAAGCTTGCCCATGCCCTTAGCGGGGACG
TTCCAGAGGAGCTGCTCGACTTATGCGCCATCGGTACGATTGCCGATCTCGTACCTCTTCATGATGAAAACAGGCACATC
GCCAAGCTTGGAATGGCGCAGTTCAGGAAAACAAAGCGTCCTGGTTTAATCGCGCTGACCAAGATAGCGGGTGCGGAGAT
TCAAAACGCGAATGAAGAAACGATCGGTTTTCAAATTGCTCCACGCATTAATGCAGTCGGCAGGATTGACCAGGCTGACC
CGGCCGTTCATCTGTTGAATACTGAGGACGAAACAGAAGCGATCGAGCTGGCCGAGGAAATCAACAGCCTGAATAAAGAG
CGCCAAAAAATCGTCAACCAGATCACAGAGGAAGCGGTTGAAATGATAGAGGAGCAGGGGCTTGACCAGCCTGTGATCGT
TGCCGCCCGGCCCGGCTGGAACCCCGGAGTGGTCGGAATCGTCGCTTCCAAGCTTGTCGAACGGTTTTACCGGCCGGCCA
TCGTGCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGATCAGCACGAAGCATCAAAGGCTTTGACCTGTTTCAAAAC
CTTTCAGAATGCCGGGATATCCTTCCCCACTTCGGCGGCCATCCGATGGCTGCCGGGATGACGCTGAATCAGGATGACGT
CGGCGCCTTAAGAGAAAGAATCAACAGGCAGGCCGAAGCTGTGTTAACAGAGGAAGATTTCATTCCCGTACAGGAGGTTG
ATCTTTGCTGCCGATTGGAGGATATAACGGTTGACAGCATTGCCGAAATGAACATGCTGGCTCCATTTGGCACGGGAAAT
CCAAAGCCGTTTGTGCTTGTCGAAGACGTCGAAATTGAGGAAGCGAGAAAAATCGGCGCCAATCAGAATCATCTGAAGCT
CATGCTGGCCGACGGTCAGGCGAAGCTGGACTGCATCGGCTTTTATAAAGGCGAAATCGAAGAGAGCGTCGTTCCCGGAG
CAAAGATTTCTCTTGTGGGCGAATTGTCGATCAATGAATGGAACAACAGAAAAAAACCGCAGCTGATGATAAAAGATGCG
GCTGTGAAAGAATGGCAGCTGTTTGATTTTAGAGGAAAGCGGACATGGGAAGAACAAATCCTGAAACTGGACCCGGAAAA
ACGCGTATTCATTTGTTTTCGAGAGGAATCCAGAGCAAAACTGGCGGGTACCGGTCTTCGGGATGAGCTGATTCTGATTC
GCGGGGAAGAAGATGCAGTTCGAATCGATCTACATAATCGCTATGCGGTTTTCATTGATACGCCGCAGTCGATTGACATA
TTCGACCATGTAATAAACGGAAAGCGGCTTGAGCGGATTTATTTAATTTTCACTCAAACGGATGACCACTTTTTCTCAAC
TTTCCCGACAAGGGACTATTTTAAATGGTACTATGCTTTTCTTCTGAAGAGAGGTTCCTTCGACTTGGTCAAATACGGCG
CAGAGCTGGCCAAGCATAAGGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTGTATGGTGCCGCAAAACGGGATTTGACAGATTCTGAAACCTACCGGAAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTTTTATATTCTTCGGCGGATGAGCTTAAACAGTGGCTGAGTAAGCGGATGG
ATGAGAGTTCTGAAGCTTACGAAAGTATGAGGAGGACATGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.338

100

0.693