Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NL113_RS00990 Genome accession   NZ_CP101130
Coordinates   244048..244950 (-) Length   300 a.a.
NCBI ID   WP_006638186.1    Uniprot ID   A0A7Y8RX47
Organism   Bacillus sp. KRF7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 239048..249950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS00975 xerC 239405..240319 (-) 915 WP_006638183.1 tyrosine recombinase XerC -
  NL113_RS00980 trmFO 240386..241690 (-) 1305 WP_006638184.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NL113_RS00985 topA 241767..243842 (-) 2076 WP_006638185.1 type I DNA topoisomerase -
  NL113_RS00990 dprA 244048..244950 (-) 903 WP_006638186.1 DNA-processing protein DprA Machinery gene
  NL113_RS00995 sucD 245072..245974 (-) 903 WP_006638187.1 succinate--CoA ligase subunit alpha -
  NL113_RS01000 sucC 245993..247153 (-) 1161 WP_006638188.1 ADP-forming succinate--CoA ligase subunit beta -
  NL113_RS01005 - 247330..247608 (-) 279 WP_006638189.1 FlhB-like flagellar biosynthesis protein -
  NL113_RS01010 - 247605..249296 (-) 1692 WP_006638190.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33176.31 Da        Isoelectric Point: 9.7386

>NTDB_id=708931 NL113_RS00990 WP_006638186.1 244048..244950(-) (dprA) [Bacillus sp. KRF7]
MNDQSELLILLRLYGILSPSLLSKWWKEDPSLSLSEETSHPLKKLSNEKISASSIRKLAEKELPKAKRLIKTYSDNGIGM
IAISSPDYPACLKTIHDPPPVLFLKGKKTFLNENRLIGIVGTRDPSSYGKSVVRHLAGELSNKDWTIVSGLAKGIDGLAH
KETIRTNGKTIGVIAGGFDHIYPRENRLLARHMAESHLLVSEHLPHIKPQKWHFPMRNRLISGLTEGIVVIQGKERSGSL
ITAYQALEQGREVFAVPGSIFDQNSQGPARLIQEGAKLVAGIDDILDELPGFKVQYTDPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=708931 NL113_RS00990 WP_006638186.1 244048..244950(-) (dprA) [Bacillus sp. KRF7]
ATGAATGATCAGAGCGAGCTGTTGATTTTGCTCCGCCTGTATGGAATCCTTTCGCCTTCCCTGTTATCCAAATGGTGGAA
GGAAGATCCTTCTTTATCGCTTTCAGAAGAAACATCCCATCCTCTAAAAAAGCTGTCAAATGAAAAGATCAGTGCAAGCT
CCATCCGTAAGCTCGCCGAAAAAGAGCTTCCAAAAGCAAAACGGCTGATAAAAACCTACAGCGATAACGGAATCGGCATG
ATCGCGATTTCGTCCCCTGACTATCCAGCCTGTCTGAAAACGATTCACGATCCGCCCCCCGTTCTTTTTTTAAAAGGAAA
GAAAACGTTTCTTAATGAAAACCGCCTTATCGGTATCGTGGGTACCCGAGATCCTTCATCATACGGAAAAAGCGTTGTCC
GCCACCTTGCCGGGGAGCTCAGCAATAAAGACTGGACGATCGTCAGCGGGCTCGCAAAAGGGATTGACGGTCTTGCCCAC
AAGGAGACCATCCGTACAAACGGAAAAACGATCGGCGTCATCGCCGGCGGATTCGACCACATATATCCCCGTGAAAACCG
TCTTCTTGCCCGGCACATGGCGGAAAGTCATTTGCTGGTGTCAGAGCACCTTCCCCATATAAAACCTCAAAAATGGCACT
TTCCGATGAGAAATCGGCTGATCAGCGGCTTAACCGAAGGAATCGTTGTCATTCAAGGCAAAGAAAGAAGCGGCTCGCTC
ATTACCGCCTATCAGGCGCTGGAACAGGGAAGAGAGGTATTTGCGGTGCCGGGTTCAATTTTTGACCAGAACTCCCAAGG
CCCGGCCAGATTGATCCAGGAAGGGGCGAAACTTGTAGCCGGCATTGATGACATTCTCGACGAACTTCCGGGTTTTAAAG
TGCAATATACGGATCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8RX47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

58.194

99.667

0.58