Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NL113_RS00960 Genome accession   NZ_CP101130
Coordinates   236609..237388 (-) Length   259 a.a.
NCBI ID   WP_006638180.1    Uniprot ID   A0A6I7F231
Organism   Bacillus sp. KRF7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 231609..242388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS00930 fliH 231664..232431 (-) 768 WP_034325767.1 flagellar assembly protein FliH -
  NL113_RS00935 fliG 232415..233431 (-) 1017 WP_029418507.1 flagellar motor switch protein FliG -
  NL113_RS00940 fliF 233445..235046 (-) 1602 WP_006638176.1 flagellar basal-body MS-ring/collar protein FliF -
  NL113_RS00945 fliE 235097..235414 (-) 318 WP_006638177.1 flagellar hook-basal body complex protein FliE -
  NL113_RS00950 flgC 235427..235879 (-) 453 WP_006638178.1 flagellar basal body rod protein FlgC -
  NL113_RS00955 flgB 235879..236268 (-) 390 WP_006638179.1 flagellar basal body rod protein FlgB -
  NL113_RS00960 codY 236609..237388 (-) 780 WP_006638180.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NL113_RS00965 hslU 237429..238832 (-) 1404 WP_006638181.1 HslU--HslV peptidase ATPase subunit -
  NL113_RS00970 hslV 238849..239391 (-) 543 WP_006638182.1 ATP-dependent protease subunit HslV -
  NL113_RS00975 xerC 239405..240319 (-) 915 WP_006638183.1 tyrosine recombinase XerC -
  NL113_RS00980 trmFO 240386..241690 (-) 1305 WP_006638184.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29087.45 Da        Isoelectric Point: 4.8196

>NTDB_id=708930 NL113_RS00960 WP_006638180.1 236609..237388(-) (codY) [Bacillus sp. KRF7]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=708930 NL113_RS00960 WP_006638180.1 236609..237388(-) (codY) [Bacillus sp. KRF7]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTCCGCGACGTCATCGATTCAAACATTTTCGTTGTCAGCCGCAGAGGTAAGCTCCTCGGCTTCTCAATTA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAACGCCAGTTTCCTGAAGATTACACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCAAACCTGGATATTAACAGCGAATATACGGCGTTCCCTGTTGAAAACCGCGATCTTTTCCA
AGCGGGACTGACGACGATCGTACCGATTATCGGAGGAGGCGAAAGACTGGGAACATTGATTCTTTCACGCCTTCAGGAGA
AATTTGAAGATGATGATTTGATCCTTGCCGAATACGGCGCAACTGTTGTCGGAATGGAGATTCTCAGAGAAAAGGCCGAG
GAAATCGAAGAGGAAGCCCGCAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCATTATCATACAGTGAGCTTGAAGCGAT
TGAACATATCTTTGAAGAGCTTGACGGAAACGAAGGCCTGCTTGTCGCGAGTAAAATCGCCGACCGAGTCGGCATTACGC
GCTCCGTCATCGTGAATGCCTTGCGAAAACTCGAGAGCGCCGGTGTTATTGAATCCAGATCATTAGGGATGAAAGGCACA
TATATTAAAGTGCTCAACAACAAATTCCTCATGGAGCTTGAAAAACTGAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F231

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467