Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H7679_RS10820 Genome accession   NZ_AP023392
Coordinates   2222829..2224103 (+) Length   424 a.a.
NCBI ID   WP_184495762.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217829..2229103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS10790 (DAT300_21050) - 2218578..2219294 (-) 717 WP_024396145.1 DUF554 domain-containing protein -
  H7679_RS10795 (DAT300_21060) - 2219299..2220045 (-) 747 WP_024396144.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  H7679_RS10800 (DAT300_21070) prmA 2220047..2221000 (-) 954 WP_024396143.1 50S ribosomal protein L11 methyltransferase -
  H7679_RS10805 (DAT300_21090) - 2221597..2221950 (-) 354 WP_014636733.1 ASCH domain-containing protein -
  H7679_RS10810 (DAT300_21100) - 2221952..2222422 (-) 471 WP_024396142.1 DUF3013 family protein -
  H7679_RS10815 (DAT300_21110) - 2222424..2222759 (-) 336 WP_024396141.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  H7679_RS10820 (DAT300_21120) rarA 2222829..2224103 (+) 1275 WP_184495762.1 replication-associated recombination protein A Machinery gene
  H7679_RS10835 (DAT300_21130) - 2224562..2225707 (-) 1146 WP_184495764.1 site-specific integrase -
  H7679_RS10840 (DAT300_21140) - 2225758..2226117 (-) 360 WP_172005307.1 DUF771 domain-containing protein -
  H7679_RS10845 (DAT300_21150) - 2226275..2227009 (-) 735 WP_184495766.1 LPXTG cell wall anchor domain-containing protein -
  H7679_RS10850 (DAT300_21160) - 2227029..2228183 (-) 1155 WP_415669127.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 46748.33 Da        Isoelectric Point: 6.2398

>NTDB_id=70786 H7679_RS10820 WP_184495762.1 2222829..2224103(+) (rarA) [Streptococcus suis strain DAT300]
MPANLALRMRPKSIDDVIGQEHLVGSGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTIHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLNADYFTA
NDTGKYERALGMTQEKIKHLKGKS

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=70786 H7679_RS10820 WP_184495762.1 2222829..2224103(+) (rarA) [Streptococcus suis strain DAT300]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCAAAATCCATTGATGATGTCATCGGTCAGGAACACCTGGTCGGTTCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGAATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAGGAGGCTAAATTTTCTGGCGGTCTGGTCCTCATGCTCGATGAAATCCACCGCCTCAACAAGACCAA
GCAAGACTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGGGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGTGTGCAGATTTTTGAATTACAACCCTTGAAAACCATCCATATCCGACAGGCCTTGGAG
CTGGCTCTGACAGACAGTGAACGTGGTTTTGATTTTCCTGTTACCATTGAGCCTGAGGCTCTGGACTTCCTAGCTAATGC
TACCAACGGTGACCTGCGTGCCGCCTATAATTCGCTAGAACTGGCTGTACTTTCGACCAAGGAAAGCGACGACGGTAGCC
GCCACATTGACCTGGACGCTGTGGAAAATAGCCTGCAAAAGTCCTACATCAGTATGGACAAGAACGGCGATGCCCATTAC
GACATTCTCTCTGCCCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCCCGTTTGATTGA
GGCGGAAGACCTGCCTAGCCTGGCCCGTCGCTTGACCGTCATTGCCTATGAAGACATCGGATTGGCCAATCCTGAAGCAC
AAATCCATACGGTGACCGCCCTTGAAGCTGCCCAGAAAATCGGATTTCCAGAGGCACGGATTTTGATTGCCAATGTGGTG
ATTGATTTGGCCCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAAAACGG
TCATCTGCCTATTCCAAATCACCTGCGGGACGGGCATTATGCTGGTAGTAAGGAGCTGGGGAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTGAATGCGGACTACTTCACCGCC
AACGACACCGGCAAATACGAGCGTGCCTTGGGTATGACCCAAGAAAAAATCAAACATCTGAAAGGGAAAAGTTAG

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.628

97.642

0.592