Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | K6J63_RS03380 | Genome accession | NZ_AP018765 |
| Coordinates | 658837..659343 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain CHBN-II-2 isolate 12H49 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 653837..664343
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J63_RS03360 (CHBNII2_06450) | - | 653930..654259 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| K6J63_RS03365 (CHBNII2_06460) | - | 654428..655273 (-) | 846 | WP_011272052.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| K6J63_RS03370 (CHBNII2_06470) | - | 655346..657940 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| K6J63_RS03375 (CHBNII2_06480) | comA | 658039..658836 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J63_RS03380 (CHBNII2_06490) | comB | 658837..659343 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J63_RS03385 (CHBNII2_06500) | comC | 659340..659861 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J63_RS03390 (CHBNII2_06510) | comD | 659858..660271 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J63_RS03395 (CHBNII2_06520) | comE | 660281..661618 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J63_RS03400 (CHBNII2_06530) | - | 661631..662317 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J63_RS03405 (CHBNII2_06540) | nfuA | 662393..662989 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J63_RS03410 (CHBNII2_06550) | nudC | 663056..663850 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=70756 K6J63_RS03380 WP_011272049.1 658837..659343(+) (comB) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=70756 K6J63_RS03380 WP_011272049.1 658837..659343(+) (comB) [Haemophilus influenzae strain CHBN-II-2 isolate 12H49]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |