Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H7679_RS04535 Genome accession   NZ_AP023392
Coordinates   890668..892410 (+) Length   580 a.a.
NCBI ID   WP_024395502.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 885668..897410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS04515 (DAT300_08460) - 886237..887055 (+) 819 WP_002935241.1 NAD kinase -
  H7679_RS04520 (DAT300_08470) - 887055..887948 (+) 894 WP_012027041.1 RluA family pseudouridine synthase -
  H7679_RS04525 (DAT300_08480) pta 887966..888940 (+) 975 WP_012775151.1 phosphate acetyltransferase -
  H7679_RS04530 (DAT300_08490) - 888942..890681 (+) 1740 WP_024395503.1 ABC transporter ATP-binding protein -
  H7679_RS04535 (DAT300_08500) rcrQ 890668..892410 (+) 1743 WP_024395502.1 ABC transporter ATP-binding protein Regulator
  H7679_RS04540 (DAT300_08510) - 892394..892786 (+) 393 WP_029694686.1 PaaI family thioesterase -
  H7679_RS04545 (DAT300_08520) mutY 892964..894124 (+) 1161 WP_063725217.1 A/G-specific adenine glycosylase -
  H7679_RS04550 (DAT300_08530) - 894787..895587 (-) 801 WP_044676110.1 helix-turn-helix domain-containing protein -
  H7679_RS04555 (DAT300_08540) - 895718..896188 (+) 471 WP_024385761.1 hypothetical protein -
  H7679_RS04560 (DAT300_08550) - 896208..896750 (+) 543 WP_063725218.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64463.51 Da        Isoelectric Point: 4.9975

>NTDB_id=70748 H7679_RS04535 WP_024395502.1 890668..892410(+) (rcrQ) [Streptococcus suis strain DAT300]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLMQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDSHSVGDLVARFSSDSEQLINGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVEAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVSI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=70748 H7679_RS04535 WP_024395502.1 890668..892410(+) (rcrQ) [Streptococcus suis strain DAT300]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGATGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCCGACTTGCGCGAACAGGTTTATGTTAAGCTGCACCAGATGCCACTATCTTA
TCTGGATAGTCATTCAGTTGGTGATTTAGTAGCTCGTTTTTCAAGTGATAGTGAACAATTAATAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAGGCAATCTCAGCTTTTGGAAGAATCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAGTTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCCATCTTTGCCTCT
TCAACGGTCAATCCAAGCACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATCTCTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGATAATGTGTCTTTCTCCTATAGCCC
TGACCGTTCTCTGATAGAACATCTGGACATTGATGTCGAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTTCTTATGCGTTTCTACGATGTGACGGCTGGTCAGATTGTTTTAGATGGTGTTTCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGATTTCT
TTATTCGTCAGCTTCCACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTTAAAATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACTA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACGAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.977

97.759

0.381

Multiple sequence alignment