Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   H7679_RS02780 Genome accession   NZ_AP023392
Coordinates   530187..530921 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain DAT300     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 525187..535921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS02755 (DAT300_05000) - 525687..525995 (-) 309 WP_015646545.1 DUF1827 family protein -
  H7679_RS02760 (DAT300_05010) - 526050..526511 (-) 462 WP_002938708.1 NUDIX hydrolase -
  H7679_RS02765 (DAT300_05020) clpE 526697..528925 (-) 2229 WP_024395236.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  H7679_RS02770 (DAT300_05030) - 529149..529379 (+) 231 WP_002938704.1 DUF1797 family protein -
  H7679_RS02775 (DAT300_05040) - 529505..530194 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  H7679_RS02780 (DAT300_05050) amiE 530187..530921 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  H7679_RS02785 (DAT300_05060) - 531003..532259 (-) 1257 WP_014638293.1 ISL3 family transposase -
  H7679_RS02790 (DAT300_05070) - 532473..533321 (+) 849 WP_024389423.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  H7679_RS02795 (DAT300_05080) - 534755..535054 (+) 300 WP_015646549.1 hypothetical protein -
  H7679_RS02800 (DAT300_05090) lepB 535044..535646 (+) 603 WP_032504114.1 signal peptidase I -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=70730 H7679_RS02780 WP_002943067.1 530187..530921(+) (amiE) [Streptococcus suis strain DAT300]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=70730 H7679_RS02780 WP_002943067.1 530187..530921(+) (amiE) [Streptococcus suis strain DAT300]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTTGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGCACAATGAACCTCT
TAGAAGTACCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATCGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATTGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment