Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | K6J65_RS03380 | Genome accession | NZ_AP018764 |
| Coordinates | 658831..659337 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain CHBN-II-1 isolate 13H34 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 653831..664337
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J65_RS03360 (CHBNII1_06450) | - | 653924..654253 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| K6J65_RS03365 (CHBNII1_06460) | - | 654422..655267 (-) | 846 | WP_011272052.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| K6J65_RS03370 (CHBNII1_06470) | - | 655340..657934 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| K6J65_RS03375 (CHBNII1_06480) | comA | 658033..658830 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J65_RS03380 (CHBNII1_06490) | comB | 658831..659337 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J65_RS03385 (CHBNII1_06500) | comC | 659334..659855 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J65_RS03390 (CHBNII1_06510) | comD | 659852..660265 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J65_RS03395 (CHBNII1_06520) | comE | 660275..661612 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J65_RS03400 (CHBNII1_06530) | - | 661625..662311 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J65_RS03405 (CHBNII1_06540) | nfuA | 662387..662983 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J65_RS03410 (CHBNII1_06550) | nudC | 663050..663844 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=70722 K6J65_RS03380 WP_011272049.1 658831..659337(+) (comB) [Haemophilus influenzae strain CHBN-II-1 isolate 13H34]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=70722 K6J65_RS03380 WP_011272049.1 658831..659337(+) (comB) [Haemophilus influenzae strain CHBN-II-1 isolate 13H34]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |