Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H7679_RS02135 Genome accession   NZ_AP023392
Coordinates   404414..405202 (+) Length   262 a.a.
NCBI ID   WP_011921926.1    Uniprot ID   A0A0H3MTH0
Organism   Streptococcus suis strain DAT300     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 399414..410202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS11345 - 400304..401669 (+) 1366 Protein_379 Cof-type HAD-IIB family hydrolase -
  H7679_RS02120 (DAT300_03850) tnpA 401834..402298 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  H7679_RS02125 (DAT300_03860) - 402441..402893 (-) 453 WP_024387582.1 universal stress protein -
  H7679_RS02130 (DAT300_03870) - 403048..404262 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  H7679_RS02135 (DAT300_03880) codY 404414..405202 (+) 789 WP_011921926.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H7679_RS02140 (DAT300_03890) - 405215..405745 (+) 531 WP_029694120.1 cysteine hydrolase family protein -
  H7679_RS02145 (DAT300_03900) rplS 406011..406358 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  H7679_RS02150 (DAT300_03910) - 406545..407219 (+) 675 WP_012774968.1 hydrolase -
  H7679_RS02155 (DAT300_03920) gatC 407436..407738 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  H7679_RS02160 (DAT300_03930) gatA 407738..409204 (+) 1467 WP_044676282.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29307.34 Da        Isoelectric Point: 4.6190

>NTDB_id=70722 H7679_RS02135 WP_011921926.1 404414..405202(+) (codY) [Streptococcus suis strain DAT300]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=70722 H7679_RS02135 WP_011921926.1 404414..405202(+) (codY) [Streptococcus suis strain DAT300]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGATTGTAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTTCCAGAAGGATATGTA
AAAGCAGTCGCGCAGGTTTATGATACGCAGGTTAACTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTTGAATCACG
ATCGACCTATCCAAATGGTCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492

Multiple sequence alignment