Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   H7677_RS09975 Genome accession   NZ_AP023391
Coordinates   2039497..2040780 (+) Length   427 a.a.
NCBI ID   WP_184493643.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2034497..2045780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS10690 (DAT299_19300) - 2035842..2035964 (-) 123 WP_024381232.1 membrane protein -
  H7677_RS09950 (DAT299_19310) - 2035969..2036715 (-) 747 WP_184493633.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  H7677_RS09955 (DAT299_19320) prmA 2036717..2037670 (-) 954 WP_184493635.1 50S ribosomal protein L11 methyltransferase -
  H7677_RS09960 (DAT299_19330) - 2038265..2038618 (-) 354 WP_184493637.1 ASCH domain-containing protein -
  H7677_RS09965 (DAT299_19340) - 2038620..2039090 (-) 471 WP_184493639.1 DUF3013 family protein -
  H7677_RS09970 (DAT299_19350) - 2039092..2039427 (-) 336 WP_184493641.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  H7677_RS09975 (DAT299_19360) rarA 2039497..2040780 (+) 1284 WP_184493643.1 replication-associated recombination protein A Machinery gene
  H7677_RS09990 (DAT299_19370) nrdG 2041261..2041818 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  H7677_RS09995 (DAT299_19380) - 2042005..2042499 (-) 495 WP_184493645.1 GNAT family N-acetyltransferase -
  H7677_RS10715 - 2042501..2043847 (-) 1347 Protein_1939 bifunctional metallophosphatase/5'-nucleotidase -
  H7677_RS10695 (DAT299_19410) - 2043849..2043983 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47156.84 Da        Isoelectric Point: 6.5833

>NTDB_id=70689 H7677_RS09975 WP_184493643.1 2039497..2040780(+) (rarA) [Streptococcus suis strain DAT299]
MPANLALRMRPKSIDDVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESEGGRHIDLDAVENSLQKSYISMDKNGDAHYD
ILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVI
DLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLAADYFTAN
DTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=70689 H7677_RS09975 WP_184493643.1 2039497..2040780(+) (rarA) [Streptococcus suis strain DAT299]
ATGCCAGCCAATCTCGCTCTTCGTATGCGGCCCAAATCCATTGATGACGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCTATGATTCTCTACGGTCCTCCGGGAATTGGCAAGACCT
CTATCGCTTCTGCCATTGCCGGTACAACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCTGGTGGTCTGGTTCTCATGCTCGATGAGATTCATCGCCTCAACAAAACTAA
ACAGGACTTCCTGCTTCCTCTTTTGGAAAATGGCAATATCATCATGATTGGGGCAACAACAGAAAATCCATTTTTCTCTA
TTTTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTACAACCCTTGAAAACCAGCCACATCCGACAGGCTCTGGAA
CTGGCTTTGACAGACAGCGAACGCGGTTTTGACTTCCCCGTCACCATTGAACCTGAGGCTCTGGATTTCCTAGCAAATGC
GACAAACGGCGACCTCCGTGCCGCCTATAATTCACTAGAACTGGCTGTACTGTCTACCAAAGAAAGCGAGGGCGGACGCC
ATATCGACTTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTACGAC
ATCCTCTCCGCCCTACAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCAGCTCGTTTGATTGAGGC
CGAAGATCTGCCTAGTCTGGCTCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTCAGA
TTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATCGGCTTTCCAGAGGCACGCATTTTGATTGCCAATGTGGTGATT
GATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTACGGAAAAATGGCCA
TCTGCCCATTCCAAATCATCTTCGGGATGGCCACTATGCTGGCAGCAAGGAGCTGGGAAATGCTATTGGCTACCAGTATC
CGCATGCCTATCCTGAAAAATGGGTGGACCAACAATACCTGCCCGATAAGTTACTAGCTGCGGACTACTTCACTGCCAAT
GACACCGGCAAATATGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAATCC
TTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-415)

AAA C-terminal domain (AAA_assoc_2)

(173-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.809

97.892

0.585

Multiple sequence alignment