Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   PF976_RS07555 Genome accession   NZ_CP116011
Coordinates   1420769..1421218 (+) Length   149 a.a.
NCBI ID   WP_013352152.1    Uniprot ID   A0A9P1NHL6
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1415769..1426218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS07515 (PF976_07515) ctaE 1415892..1416515 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  PF976_RS07520 (PF976_07520) ctaF 1416518..1416850 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  PF976_RS07525 (PF976_07525) ctaG 1416875..1417759 (+) 885 WP_014471807.1 cytochrome c oxidase assembly factor CtaG -
  PF976_RS07530 (PF976_07530) - 1417792..1418151 (-) 360 WP_013352148.1 YugN family protein -
  PF976_RS07535 (PF976_07535) - 1418292..1418735 (+) 444 WP_013352149.1 CBS domain-containing protein -
  PF976_RS07540 (PF976_07540) - 1418820..1419860 (+) 1041 WP_013352150.1 CAP domain-containing protein -
  PF976_RS07545 (PF976_07545) - 1420032..1420442 (+) 411 WP_013352151.1 YlbD family protein -
  PF976_RS07550 (PF976_07550) - 1420458..1420697 (+) 240 WP_003154475.1 YlbE-like family protein -
  PF976_RS07555 (PF976_07555) ylbF 1420769..1421218 (+) 450 WP_013352152.1 YlbF family regulator Regulator
  PF976_RS07560 (PF976_07560) - 1421277..1421549 (+) 273 WP_013352153.1 YlbG family protein -
  PF976_RS07565 (PF976_07565) rsmD 1421848..1422402 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PF976_RS07570 (PF976_07570) coaD 1422407..1422889 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  PF976_RS07575 (PF976_07575) ylbJ 1422907..1424133 (-) 1227 WP_014471810.1 sporulation integral membrane protein YlbJ -
  PF976_RS07580 (PF976_07580) - 1424311..1425090 (+) 780 WP_013352156.1 patatin-like phospholipase family protein -
  PF976_RS07585 (PF976_07585) sepM 1425096..1426118 (+) 1023 WP_013352157.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16885.96 Da        Isoelectric Point: 4.9442

>NTDB_id=706735 PF976_RS07555 WP_013352152.1 1420769..1421218(+) (ylbF) [Bacillus amyloliquefaciens strain SRCM124317]
MYATVESVRLQSEAEQLAGMILQSETAENYRDCYKRLHEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=706735 PF976_RS07555 WP_013352152.1 1420769..1421218(+) (ylbF) [Bacillus amyloliquefaciens strain SRCM124317]
ATGTATGCAACAGTTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCATGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGGTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NHL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

88.591

100

0.886