Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NLV76_RS13975 Genome accession   NZ_CP100752
Coordinates   2704437..2706797 (-) Length   786 a.a.
NCBI ID   WP_254501080.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2699437..2711797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS13955 (NLV76_13955) - 2699515..2701068 (+) 1554 WP_254501077.1 SH3 domain-containing protein -
  NLV76_RS13960 (NLV76_13960) dtd 2701094..2701534 (-) 441 WP_059293508.1 D-aminoacyl-tRNA deacylase -
  NLV76_RS13965 (NLV76_13965) relA 2701547..2703751 (-) 2205 WP_254501078.1 GTP diphosphokinase -
  NLV76_RS13970 (NLV76_13970) - 2703919..2704431 (-) 513 WP_254501079.1 adenine phosphoribosyltransferase -
  NLV76_RS13975 (NLV76_13975) recJ 2704437..2706797 (-) 2361 WP_254501080.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NLV76_RS13980 (NLV76_13980) - 2706864..2707199 (-) 336 WP_069487124.1 lipopolysaccharide assembly LapA domain-containing protein -
  NLV76_RS13985 (NLV76_13985) - 2707276..2707773 (-) 498 WP_254501081.1 cation:proton antiporter regulatory subunit -
  NLV76_RS13990 (NLV76_13990) secDF 2707933..2710146 (-) 2214 WP_254501082.1 protein translocase subunit SecDF -
  NLV76_RS13995 (NLV76_13995) - 2710184..2710480 (-) 297 WP_254501083.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88216.71 Da        Isoelectric Point: 4.9486

>NTDB_id=706699 NLV76_RS13975 WP_254501080.1 2704437..2706797(-) (recJ) [Bacillus halotolerans strain MEC_B301]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAENARLFLHTKDAEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKVRRTNRLGLKELIKVSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSSQLDCVGFNKGELEESIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDTVSALPSDKRVIVSFKEETTTLLQSEDLRHDVHVISSEDQAKAYELDGAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGAFDLKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMEPDQKLNYSAAEEPKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=706699 NLV76_RS13975 WP_254501080.1 2704437..2706797(-) (recJ) [Bacillus halotolerans strain MEC_B301]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATGCCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTAGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCGTTTCGTTCAATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCAGAGCTTCCGGATGTTCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGAACCATTGCCGATCTAGTTCCGCTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGGTCCGGCGGACGAACCGGCTTGGCTTAAAAGAACTGATTAAGGTCTCAGGCGGAGAAAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAATGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTTATGTCAGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCGATTGT
AGTGGCAAAAGCAGGGTGGAATCCCGGAGTCGTCGGAATTGTAGCTTCAAAGCTTGTAGACCGTTTCTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCTCCCTTCGGCATGCTGAAT
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCATCCCAGCTTGACTGCGTCGGTTTTAATAAAGGCGAGCTTGAGGAAAGTATTGTACCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAATGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATACGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACTACAACGCTTCTTCAGTCTGAAGATCTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATATGAACTTGACGGTGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCACGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCGCTTTTGACTTGAAAAAACACGGTT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGATAAGCGGAGCGAAAAAACGCGATTTAACGGACTCACAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCCGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCCGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.766

100

0.938