Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NLV76_RS09060 Genome accession   NZ_CP100752
Coordinates   1731083..1731862 (+) Length   259 a.a.
NCBI ID   WP_254503445.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1726083..1736862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS09040 (NLV76_09040) trmFO 1726777..1728084 (+) 1308 WP_254503441.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NLV76_RS09045 (NLV76_09045) xerC 1728152..1729066 (+) 915 WP_254503442.1 tyrosine recombinase XerC -
  NLV76_RS09050 (NLV76_09050) clpQ 1729079..1729624 (+) 546 WP_254503443.1 ATP-dependent protease subunit ClpQ -
  NLV76_RS09055 (NLV76_09055) hslU 1729641..1731044 (+) 1404 WP_254503444.1 HslU--HslV peptidase ATPase subunit -
  NLV76_RS09060 (NLV76_09060) codY 1731083..1731862 (+) 780 WP_254503445.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NLV76_RS09065 (NLV76_09065) flgB 1732245..1732634 (+) 390 WP_044155900.1 flagellar basal body rod protein FlgB -
  NLV76_RS09070 (NLV76_09070) flgC 1732634..1733086 (+) 453 WP_044155899.1 flagellar basal body rod protein FlgC -
  NLV76_RS09075 (NLV76_09075) fliE 1733097..1733417 (+) 321 WP_254503616.1 flagellar hook-basal body complex protein FliE -
  NLV76_RS09080 (NLV76_09080) fliF 1733463..1735073 (+) 1611 WP_059292788.1 flagellar basal-body MS-ring/collar protein FliF -
  NLV76_RS09085 (NLV76_09085) fliG 1735086..1736102 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NLV76_RS09090 (NLV76_09090) fliH 1736095..1736847 (+) 753 WP_254503446.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28969.17 Da        Isoelectric Point: 4.6467

>NTDB_id=706677 NLV76_RS09060 WP_254503445.1 1731083..1731862(+) (codY) [Bacillus halotolerans strain MEC_B301]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAIGSLSYSELEAIEHIFEDLDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=706677 NLV76_RS09060 WP_254503445.1 1731083..1731862(+) (codY) [Bacillus halotolerans strain MEC_B301]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGAAAACTTCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAGGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGACATCAATAGTGAGTACACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATTCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCAATCGGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGACCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTGAACAACAAATTCCTGATTGAATTAGAAAACCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.059

98.456

0.463