Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NLV76_RS09030 Genome accession   NZ_CP100752
Coordinates   1723538..1724437 (+) Length   299 a.a.
NCBI ID   WP_254503439.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1718538..1729437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS09010 (NLV76_09010) - 1719207..1720937 (+) 1731 WP_254503615.1 hypothetical protein -
  NLV76_RS09015 (NLV76_09015) - 1720934..1721215 (+) 282 WP_254503437.1 FlhB-like flagellar biosynthesis protein -
  NLV76_RS09020 (NLV76_09020) sucC 1721389..1722546 (+) 1158 WP_254503438.1 ADP-forming succinate--CoA ligase subunit beta -
  NLV76_RS09025 (NLV76_09025) sucD 1722575..1723477 (+) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  NLV76_RS09030 (NLV76_09030) dprA 1723538..1724437 (+) 900 WP_254503439.1 DNA-processing protein DprA Machinery gene
  NLV76_RS09035 (NLV76_09035) topA 1724626..1726701 (+) 2076 WP_254503440.1 type I DNA topoisomerase -
  NLV76_RS09040 (NLV76_09040) trmFO 1726777..1728084 (+) 1308 WP_254503441.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NLV76_RS09045 (NLV76_09045) xerC 1728152..1729066 (+) 915 WP_254503442.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32994.23 Da        Isoelectric Point: 9.3995

>NTDB_id=706676 NLV76_RS09030 WP_254503439.1 1723538..1724437(+) (dprA) [Bacillus halotolerans strain MEC_B301]
MDQAAACLITCRINQLLPPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIRVVNHLTIDLCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPIKLIQEGAKAIWSAEDIYADLPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=706676 NLV76_RS09030 WP_254503439.1 1723538..1724437(+) (dprA) [Bacillus halotolerans strain MEC_B301]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTACCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCTC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCTCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCTTATGGAATTCGGGTTGTCAATC
ATCTTACAATAGACCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TATAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGACCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

82.943

100

0.829