Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   H7677_RS04470 Genome accession   NZ_AP023391
Coordinates   897984..899726 (+) Length   580 a.a.
NCBI ID   WP_184494274.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT299     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 892984..904726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS04450 (DAT299_08350) - 893553..894371 (+) 819 WP_002935241.1 NAD kinase -
  H7677_RS04455 (DAT299_08360) - 894371..895264 (+) 894 WP_184494270.1 RluA family pseudouridine synthase -
  H7677_RS04460 (DAT299_08370) pta 895282..896256 (+) 975 WP_029176800.1 phosphate acetyltransferase -
  H7677_RS04465 (DAT299_08380) - 896258..897997 (+) 1740 WP_184494272.1 ABC transporter ATP-binding protein -
  H7677_RS04470 (DAT299_08390) rcrQ 897984..899726 (+) 1743 WP_184494274.1 ABC transporter ATP-binding protein Regulator
  H7677_RS04475 (DAT299_08400) - 899710..900102 (+) 393 WP_029694686.1 PaaI family thioesterase -
  H7677_RS04480 (DAT299_08410) mutY 900280..901440 (+) 1161 WP_014637870.1 A/G-specific adenine glycosylase -
  H7677_RS04485 (DAT299_08420) - 902104..902904 (-) 801 WP_024383594.1 helix-turn-helix domain-containing protein -
  H7677_RS04490 (DAT299_08430) - 903035..903505 (+) 471 WP_148115719.1 hypothetical protein -
  H7677_RS04495 (DAT299_08440) - 903525..904067 (+) 543 WP_148115878.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64430.57 Da        Isoelectric Point: 5.3355

>NTDB_id=70651 H7677_RS04470 WP_184494274.1 897984..899726(+) (rcrQ) [Streptococcus suis strain DAT299]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGIIGKMVMVILLNTLMQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDSHSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LVVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLEESISQLTLVQSFNAQEQFTQVFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFENVSFSYSPDRSLIEHLDIAVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIALDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=70651 H7677_RS04470 WP_184494274.1 897984..899726(+) (rcrQ) [Streptococcus suis strain DAT299]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTAGGGATAATTGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGATGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCCGACTTGCGTGAACAGGTTTATGTTAAGCTGCACCAGATGCCACTATCTTA
TCTGGATAGTCATTCAGTTGGTGATTTAGTAGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTTAATCAATTTTTCATAGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGGTTGTTGTTGCCCTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAGGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGTTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCCATCTTTGCCTCT
TCAACGGTCAATCCAAGTACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGGTCTCTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGACTGTTTGCTATCTTGGCTCTAGATAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGCTGAAGGGAGCTATTTCCTTTGAAAATGTGTCTTTTTCCTATAGTCC
TGATCGTTCTCTGATTGAACATCTGGATATTGCTGTCAAAGCTGGCCAAAAGGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTGCTTATGCGTTTCTACGATGTAACGGCTGGTCAAATTGCTTTAGATGGGGTTCCGATT
AGCCAGTACAGTCGTGAGGATCTTCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACGAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTAGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGCCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(354-501)

ABC transporter transmembrane region (ABC_membrane)

(22-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.33

97.759

0.384

Multiple sequence alignment