Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP06_RS06880 Genome accession   NZ_CP115964
Coordinates   1430323..1430748 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain LYSZa2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425323..1435748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP06_RS06865 (PCP06_06860) pilX 1425887..1426474 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  PCP06_RS06870 (PCP06_06865) pilY1 1426486..1429977 (+) 3492 WP_023132295.1 type 4a pilus biogenesis protein PilY1 -
  PCP06_RS06875 (PCP06_06870) pilY2 1429979..1430326 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP06_RS06880 (PCP06_06875) comF 1430323..1430748 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP06_RS06885 (PCP06_06880) ispH 1430795..1431739 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP06_RS06890 (PCP06_06885) fkpB 1431825..1432265 (-) 441 WP_023108763.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP06_RS06895 (PCP06_06890) lspA 1432258..1432767 (-) 510 WP_003102615.1 signal peptidase II -
  PCP06_RS06900 (PCP06_06895) ileS 1432760..1435591 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=706467 PCP06_RS06880 WP_003094721.1 1430323..1430748(+) (comF) [Pseudomonas aeruginosa strain LYSZa2]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=706467 PCP06_RS06880 WP_003094721.1 1430323..1430748(+) (comF) [Pseudomonas aeruginosa strain LYSZa2]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383