Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PG907_RS13920 Genome accession   NZ_CP115955
Coordinates   2962138..2962578 (-) Length   146 a.a.
NCBI ID   WP_275760338.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN2340     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2957138..2967578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG907_RS13900 - 2959494..2960030 (-) 537 WP_193027660.1 PilX N-terminal domain-containing pilus assembly protein -
  PG907_RS13905 - 2960034..2961062 (-) 1029 WP_275760337.1 PilW family protein -
  PG907_RS13910 pilV 2961059..2961649 (-) 591 WP_043899105.1 type IV pilus modification protein PilV -
  PG907_RS13915 - 2961646..2962134 (-) 489 WP_016723684.1 Tfp pilus assembly protein FimT/FimU -
  PG907_RS13920 comF 2962138..2962578 (-) 441 WP_275760338.1 type IV pilin protein Machinery gene
  PG907_RS13925 pilU 2962773..2963912 (-) 1140 WP_197386915.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PG907_RS13930 pilT 2963965..2965008 (-) 1044 WP_193027655.1 type IV pilus twitching motility protein PilT Machinery gene
  PG907_RS13935 - 2965133..2965855 (+) 723 WP_193027654.1 YggS family pyridoxal phosphate-dependent enzyme -
  PG907_RS13940 proC 2965890..2966714 (+) 825 WP_193027653.1 pyrroline-5-carboxylate reductase -
  PG907_RS13945 - 2966737..2967015 (+) 279 WP_193027652.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15116.03 Da        Isoelectric Point: 8.4476

>NTDB_id=706359 PG907_RS13920 WP_275760338.1 2962138..2962578(-) (comF) [Ralstonia pseudosolanacearum strain RUN2340]
MASTLAGQRARSARGFTLIELMIVAAIVAILAVLAYPSYVQYVVRSNRAAAESFMQEVAAAQERFLLDNRTYAADLATLQ
YASSVPASVASNYQFSFTAVTTAPPAYTLNATPAGSQASSDAACGTLGLSNTGSKTASGGASNCWK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=706359 PG907_RS13920 WP_275760338.1 2962138..2962578(-) (comF) [Ralstonia pseudosolanacearum strain RUN2340]
GTGGCAAGCACGCTTGCGGGCCAGCGCGCGCGGTCGGCGCGGGGCTTCACGCTGATCGAACTCATGATCGTGGCGGCTAT
CGTCGCCATTCTTGCGGTTCTGGCGTATCCCTCTTACGTTCAGTACGTCGTGCGCTCCAACCGGGCGGCGGCGGAATCGT
TCATGCAGGAAGTGGCCGCGGCCCAAGAGCGCTTTCTGCTCGATAACCGGACCTACGCCGCAGACCTGGCGACGCTGCAA
TATGCCAGCAGCGTTCCGGCCAGCGTCGCCTCCAACTACCAGTTCAGCTTCACTGCCGTCACGACGGCTCCGCCGGCGTA
TACGCTGAATGCAACGCCGGCGGGCAGCCAGGCCTCCAGCGACGCCGCGTGCGGCACGCTCGGCCTGTCGAACACCGGCA
GCAAGACGGCCTCCGGCGGTGCCTCCAACTGCTGGAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(37-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

40

92.466

0.37