Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H7677_RS01715 Genome accession   NZ_AP023391
Coordinates   345945..346733 (+) Length   262 a.a.
NCBI ID   WP_011921926.1    Uniprot ID   A0A0H3MTH0
Organism   Streptococcus suis strain DAT299     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 340945..351733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7677_RS10495 - 341531..342896 (+) 1366 Protein_296 Cof-type HAD-IIB family hydrolase -
  H7677_RS01700 tnpA 343060..343572 (+) 513 Protein_297 IS200/IS605 family transposase -
  H7677_RS01705 (DAT299_02980) - 343715..344167 (-) 453 WP_004195772.1 universal stress protein -
  H7677_RS01710 (DAT299_02990) - 344322..345536 (+) 1215 WP_011921925.1 pyridoxal phosphate-dependent aminotransferase -
  H7677_RS01715 (DAT299_03000) codY 345945..346733 (+) 789 WP_011921926.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H7677_RS01720 (DAT299_03010) - 346746..347276 (+) 531 WP_172060512.1 cysteine hydrolase family protein -
  H7677_RS01725 (DAT299_03020) rplS 347754..348101 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  H7677_RS01730 (DAT299_03030) - 348260..348934 (+) 675 WP_012774968.1 hydrolase -
  H7677_RS01735 (DAT299_03040) gatC 349151..349453 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  H7677_RS01740 (DAT299_03050) gatA 349453..350919 (+) 1467 WP_172060485.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29307.34 Da        Isoelectric Point: 4.6190

>NTDB_id=70624 H7677_RS01715 WP_011921926.1 345945..346733(+) (codY) [Streptococcus suis strain DAT299]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=70624 H7677_RS01715 WP_011921926.1 345945..346733(+) (codY) [Streptococcus suis strain DAT299]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGTCTGACAACGATAGCGCCTATCCATGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MTH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492

Multiple sequence alignment