Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PCM89_RS05760 Genome accession   NZ_CP115887
Coordinates   1211892..1212665 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain C308     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206892..1217665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS05740 (PCM89_05740) trmFO 1207236..1208543 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  PCM89_RS05745 (PCM89_05745) xerC 1208960..1209856 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  PCM89_RS05750 (PCM89_05750) hslV 1209853..1210398 (+) 546 WP_000072678.1 ATP-dependent protease subunit HslV -
  PCM89_RS05755 (PCM89_05755) hslU 1210464..1211867 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  PCM89_RS05760 (PCM89_05760) codY 1211892..1212665 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PCM89_RS05765 (PCM89_05765) - 1212716..1212808 (+) 93 WP_031788481.1 hypothetical protein -
  PCM89_RS05770 (PCM89_05770) rpsB 1213007..1213774 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  PCM89_RS05775 (PCM89_05775) - 1213808..1213921 (+) 114 WP_001789890.1 hypothetical protein -
  PCM89_RS05780 (PCM89_05780) tsf 1213956..1214837 (+) 882 WP_000201387.1 translation elongation factor Ts -
  PCM89_RS05785 (PCM89_05785) pyrH 1214974..1215696 (+) 723 WP_000057330.1 UMP kinase -
  PCM89_RS05790 (PCM89_05790) frr 1215715..1216269 (+) 555 WP_001280005.1 ribosome recycling factor -
  PCM89_RS05795 (PCM89_05795) - 1216642..1217412 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=706156 PCM89_RS05760 WP_000055337.1 1211892..1212665(+) (codY) [Staphylococcus aureus strain C308]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=706156 PCM89_RS05760 WP_000055337.1 1211892..1212665(+) (codY) [Staphylococcus aureus strain C308]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428