Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NLW79_RS08850 Genome accession   NZ_CP100651
Coordinates   1716583..1717362 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain MEC_B334     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711583..1722362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLW79_RS08830 (NLW79_08830) trmFO 1712277..1713584 (+) 1308 WP_151175024.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NLW79_RS08835 (NLW79_08835) xerC 1713652..1714566 (+) 915 WP_106020696.1 tyrosine recombinase XerC -
  NLW79_RS08840 (NLW79_08840) clpQ 1714579..1715124 (+) 546 WP_014663962.1 ATP-dependent protease subunit ClpQ -
  NLW79_RS08845 (NLW79_08845) hslU 1715132..1716544 (+) 1413 WP_255004726.1 HslU--HslV peptidase ATPase subunit -
  NLW79_RS08850 (NLW79_08850) codY 1716583..1717362 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NLW79_RS08855 (NLW79_08855) flgB 1717742..1718131 (+) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  NLW79_RS08860 (NLW79_08860) flgC 1718131..1718583 (+) 453 WP_044155899.1 flagellar basal body rod protein FlgC -
  NLW79_RS08865 (NLW79_08865) fliE 1718594..1718914 (+) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  NLW79_RS08870 (NLW79_08870) fliF 1718960..1720570 (+) 1611 WP_024121396.1 flagellar basal-body MS-ring/collar protein FliF -
  NLW79_RS08875 (NLW79_08875) fliG 1720583..1721599 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NLW79_RS08880 (NLW79_08880) fliH 1721592..1722344 (+) 753 WP_106020699.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=706002 NLW79_RS08850 WP_003220850.1 1716583..1717362(+) (codY) [Bacillus halotolerans strain MEC_B334]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=706002 NLW79_RS08850 WP_003220850.1 1716583..1717362(+) (codY) [Bacillus halotolerans strain MEC_B334]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATACTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTAGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467