Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PBU98_RS00195 Genome accession   NZ_CP115821
Coordinates   37666..38256 (+) Length   196 a.a.
NCBI ID   WP_049067448.1    Uniprot ID   -
Organism   Escherichia coli strain E1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 32666..43256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBU98_RS00180 ilvN 33921..34211 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  PBU98_RS00185 - 35277..35759 (+) 483 WP_096951643.1 hypothetical protein -
  PBU98_RS00190 - 36035..37504 (+) 1470 WP_001551899.1 hypothetical protein -
  PBU98_RS00195 letA 37666..38256 (+) 591 WP_049067448.1 transcriptional regulator UhpA Regulator
  PBU98_RS00200 uhpB 38256..39758 (+) 1503 WP_001551898.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  PBU98_RS00205 uhpC 39768..41087 (+) 1320 WP_000936560.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  PBU98_RS00210 uhpT 41343..42734 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20919.33 Da        Isoelectric Point: 5.9982

>NTDB_id=706002 PBU98_RS00195 WP_049067448.1 37666..38256(+) (letA) [Escherichia coli strain E1]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFSSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=706002 PBU98_RS00195 WP_049067448.1 37666..38256(+) (letA) [Escherichia coli strain E1]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTAGTTCGGGGCGCGAGGCGCTGGCGGGGTTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378