Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   OSK17_RS08360 Genome accession   NZ_CP115738
Coordinates   1577485..1577934 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain W7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572485..1582934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSK17_RS08320 (OSK17_08320) ctaE 1572502..1573125 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  OSK17_RS08325 (OSK17_08325) ctaF 1573128..1573460 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  OSK17_RS08330 (OSK17_08330) ctaG 1573487..1574380 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  OSK17_RS08335 (OSK17_08335) ylbA 1574412..1574774 (-) 363 WP_003232238.1 YugN family protein -
  OSK17_RS08340 (OSK17_08340) ylbB 1574914..1575360 (+) 447 WP_003221362.1 CBS domain-containing protein -
  OSK17_RS08345 (OSK17_08345) ylbC 1575444..1576484 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  OSK17_RS08350 (OSK17_08350) ylbD 1576716..1577114 (+) 399 WP_003232233.1 YlbD family protein -
  OSK17_RS08355 (OSK17_08355) ylbE 1577130..1577369 (+) 240 WP_003232231.1 YlbE-like family protein -
  OSK17_RS08360 (OSK17_08360) ylbF 1577485..1577934 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  OSK17_RS08365 (OSK17_08365) ylbG 1577989..1578261 (+) 273 WP_009967171.1 YlbG family protein -
  OSK17_RS08370 (OSK17_08370) rsmD 1578584..1579138 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OSK17_RS08375 (OSK17_08375) coaD 1579143..1579628 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  OSK17_RS08380 (OSK17_08380) spoVV 1579639..1580865 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  OSK17_RS08385 (OSK17_08385) ylbK 1581046..1581828 (+) 783 WP_021479345.1 patatin family protein -
  OSK17_RS08390 (OSK17_08390) sepM 1581830..1582855 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=705909 OSK17_RS08360 WP_003221370.1 1577485..1577934(+) (ylbF) [Bacillus subtilis strain W7]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=705909 OSK17_RS08360 WP_003221370.1 1577485..1577934(+) (ylbF) [Bacillus subtilis strain W7]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1