Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FGCSD_RS06690 Genome accession   NZ_AP018726
Coordinates   1337835..1338701 (-) Length   288 a.a.
NCBI ID   WP_003057428.1    Uniprot ID   A0AAE6NAQ1
Organism   Streptococcus dysgalactiae strain Kdys0611     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1332835..1343701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGCSD_RS06670 (FGCSD_1270) - 1333025..1333411 (-) 387 WP_129555866.1 DUF1722 domain-containing protein -
  FGCSD_RS06675 (FGCSD_1271) - 1333404..1333781 (-) 378 WP_129555867.1 OsmC family protein -
  FGCSD_RS06680 (FGCSD_1272) pheT 1333894..1336299 (-) 2406 WP_129555868.1 phenylalanine--tRNA ligase subunit beta -
  FGCSD_RS06685 (FGCSD_1273) pheS 1336509..1337552 (-) 1044 WP_129555869.1 phenylalanine--tRNA ligase subunit alpha -
  FGCSD_RS06690 (FGCSD_1274) endA 1337835..1338701 (-) 867 WP_003057428.1 DNA/RNA non-specific endonuclease Machinery gene
  FGCSD_RS06695 (FGCSD_1275) - 1338737..1338925 (-) 189 WP_111716018.1 DNA-directed RNA polymerase subunit beta -
  FGCSD_RS06700 (FGCSD_1276) murA 1338929..1340200 (-) 1272 WP_129555870.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FGCSD_RS06705 (FGCSD_1277) - 1340265..1340501 (-) 237 WP_277997757.1 DUF1146 family protein -
  FGCSD_RS06710 (FGCSD_1278) - 1340830..1341246 (-) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  FGCSD_RS06715 (FGCSD_1279) atpD 1341259..1342665 (-) 1407 WP_129555871.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31917.94 Da        Isoelectric Point: 10.0750

>NTDB_id=70586 FGCSD_RS06690 WP_003057428.1 1337835..1338701(-) (endA) [Streptococcus dysgalactiae strain Kdys0611]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSDIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=70586 FGCSD_RS06690 WP_003057428.1 1337835..1338701(-) (endA) [Streptococcus dysgalactiae strain Kdys0611]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGATCATGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCTAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGGAAAAGGGTACGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5

Multiple sequence alignment