Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NLK52_RS08635 Genome accession   NZ_CP100436
Coordinates   1654100..1654879 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain MEC_B298     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1649100..1659879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK52_RS08615 (NLK52_08615) trmFO 1649793..1651100 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NLK52_RS08620 (NLK52_08620) xerC 1651168..1652082 (+) 915 WP_015383656.1 tyrosine recombinase XerC -
  NLK52_RS08625 (NLK52_08625) clpQ 1652095..1652640 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NLK52_RS08630 (NLK52_08630) hslU 1652648..1654060 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  NLK52_RS08635 (NLK52_08635) codY 1654100..1654879 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NLK52_RS08640 (NLK52_08640) flgB 1655259..1655648 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  NLK52_RS08645 (NLK52_08645) flgC 1655648..1656100 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  NLK52_RS08650 (NLK52_08650) fliE 1656111..1656431 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NLK52_RS08655 (NLK52_08655) fliF 1656477..1658087 (+) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  NLK52_RS08660 (NLK52_08660) fliG 1658100..1659116 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NLK52_RS08665 (NLK52_08665) fliH 1659109..1659861 (+) 753 WP_015383659.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=705425 NLK52_RS08635 WP_003220850.1 1654100..1654879(+) (codY) [Bacillus subtilis strain MEC_B298]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=705425 NLK52_RS08635 WP_003220850.1 1654100..1654879(+) (codY) [Bacillus subtilis strain MEC_B298]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467