Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NLY76_RS03765 Genome accession   NZ_CP100430
Coordinates   777429..778268 (+) Length   279 a.a.
NCBI ID   WP_024386528.1    Uniprot ID   A0AB33U762
Organism   Streptococcus suis strain LSS42     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 772429..783268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS03735 (NLY76_03735) - 772893..773771 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  NLY76_RS03740 (NLY76_03740) atpD 773791..775197 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  NLY76_RS03745 (NLY76_03745) - 775207..775623 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  NLY76_RS03750 (NLY76_03750) - 775683..775907 (+) 225 WP_044685075.1 DUF1146 family protein -
  NLY76_RS03755 (NLY76_03755) murA 775932..777215 (+) 1284 WP_044770183.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NLY76_RS03760 (NLY76_03760) - 777208..777399 (+) 192 WP_061747647.1 DNA-directed RNA polymerase subunit beta -
  NLY76_RS03765 (NLY76_03765) endA 777429..778268 (+) 840 WP_024386528.1 DNA/RNA non-specific endonuclease Machinery gene
  NLY76_RS03770 (NLY76_03770) - 778455..780008 (+) 1554 WP_044770182.1 MFS transporter -
  NLY76_RS03775 (NLY76_03775) - 780064..781092 (+) 1029 WP_044770181.1 sugar kinase -
  NLY76_RS03780 (NLY76_03780) uidA 781108..782907 (+) 1800 WP_044770180.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30119.29 Da        Isoelectric Point: 6.2370

>NTDB_id=705212 NLY76_RS03765 WP_024386528.1 777429..778268(+) (endA) [Streptococcus suis strain LSS42]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=705212 NLY76_RS03765 WP_024386528.1 777429..778268(+) (endA) [Streptococcus suis strain LSS42]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGCAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCGAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.763

84.588

0.599
  endA Streptococcus pneumoniae D39

70.763

84.588

0.599
  endA Streptococcus pneumoniae R6

70.763

84.588

0.599
  endA Streptococcus pneumoniae TIGR4

70.763

84.588

0.599