Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP62_RS32130 Genome accession   NZ_CP115482
Coordinates   6793929..6794354 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain F001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6788929..6799354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP62_RS32115 (PCP62_32095) pilX 6789493..6790080 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PCP62_RS32120 (PCP62_32100) pilY1 6790092..6793583 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PCP62_RS32125 (PCP62_32105) pilY2 6793585..6793932 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP62_RS32130 (PCP62_32110) comF 6793929..6794354 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP62_RS32135 (PCP62_32115) ispH 6794401..6795345 (-) 945 WP_034021636.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP62_RS32140 (PCP62_32120) fkpB 6795431..6795871 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP62_RS32145 (PCP62_32125) lspA 6795864..6796373 (-) 510 WP_003110420.1 signal peptidase II -
  PCP62_RS32150 (PCP62_32130) ileS 6796366..6799197 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=705055 PCP62_RS32130 WP_003094721.1 6793929..6794354(+) (comF) [Pseudomonas aeruginosa strain F001]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=705055 PCP62_RS32130 WP_003094721.1 6793929..6794354(+) (comF) [Pseudomonas aeruginosa strain F001]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383