Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NKG37_RS24070 Genome accession   NZ_CP100420
Coordinates   4985035..4987398 (-) Length   787 a.a.
NCBI ID   WP_254415454.1    Uniprot ID   -
Organism   Niallia sp. RD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4980035..4992398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKG37_RS24055 (NKG37_24055) dtd 4981313..4981753 (-) 441 WP_101730754.1 D-aminoacyl-tRNA deacylase -
  NKG37_RS24060 (NKG37_24060) - 4981765..4983960 (-) 2196 WP_016201668.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NKG37_RS24065 (NKG37_24065) - 4984532..4985044 (-) 513 WP_016201669.1 adenine phosphoribosyltransferase -
  NKG37_RS24070 (NKG37_24070) recJ 4985035..4987398 (-) 2364 WP_254415454.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NKG37_RS24075 (NKG37_24075) - 4987582..4988898 (-) 1317 WP_254415264.1 ISLre2 family transposase -
  NKG37_RS24080 (NKG37_24080) - 4989365..4989664 (-) 300 WP_016201672.1 lipopolysaccharide assembly LapA domain-containing protein -
  NKG37_RS24085 (NKG37_24085) secDF 4990089..4992341 (-) 2253 WP_254415455.1 protein translocase subunit SecDF -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 89012.72 Da        Isoelectric Point: 4.8925

>NTDB_id=705047 NKG37_RS24070 WP_254415454.1 4985035..4987398(-) (recJ) [Niallia sp. RD1]
MLRSKKRWIKEEAPNKEKASELAEELKIAPLVASLLIKRGYYTTEEAKAFLFDDNNEFHDPFLLLGMNIAVERIKKAISN
NESILIFGDYDADGVTSTTVMMKTLEDLGANVQFYIPNRFTEGYGPNEGAFRYAKSIGVQLIITVDTGIAAVHEAQVAKE
LDIDLIITDHHEPGPVLPEALAIIHPKIEGSKYPFRDLAGVGVAFKLSHALYGSVPLHLLPFAAIGTIADLVSLTGENRL
LAKKGIKALQETNNIGLNALYRQMNVEKNAINEETIGFMLAPRINAIGRLGSADPAVELLSTDDPELAKELALEMEETNK
ERQAIVNQITEEAIEQVEQNYPLAENRVLIVGKEGWNPGVVGIVASRLVEKFYRPTIILSFDYEKGVAKGSARSIEGFDL
YQNLSTCRDILPHFGGHPMAAGMSLKIDDVDVLRNNLNKLAFDQLTEEDLVPLTKVDGSFSISDISIQSIEDMQMLPPFG
VDNPKPKLTFCDLEVENMRKIGSNQNHLKILLKQNEFDLDGIGFGIGDLCDHIAPNAKVSVLGELSINEWNNRKKTQIFI
QDIEVSHWQLFDYRSLRKMNHLYDVVPENAHWIFFHQDSVPKDMNQQVSYQVMETIEQAAFFESVDNAIVLADYPPNIDM
LKTLLANNQPERIYAVFYKQQSDFFSTMPTRDHFKWFYAFLAKQGMFHLGKFGGELARRKGWSKETVDFMSKVFFELNFV
TMKDGFISLNKNVPKRDLSESISFQQKQAQFELENELIYSSYEQLKNWFDLILKKSVNNEEAVKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=705047 NKG37_RS24070 WP_254415454.1 4985035..4987398(-) (recJ) [Niallia sp. RD1]
ATGTTACGTTCTAAAAAAAGATGGATAAAAGAAGAAGCTCCCAATAAAGAAAAAGCTTCCGAATTAGCGGAAGAATTAAA
AATAGCACCACTAGTTGCCTCACTTTTAATAAAAAGAGGTTATTATACTACAGAAGAAGCAAAGGCTTTTTTATTTGATG
ATAATAATGAATTTCATGATCCGTTTTTACTTTTAGGAATGAATATAGCGGTTGAACGAATAAAGAAAGCAATTTCTAAT
AATGAATCAATCTTAATTTTTGGAGATTATGACGCCGACGGAGTAACCAGTACGACTGTAATGATGAAAACATTAGAAGA
TCTCGGTGCGAATGTGCAATTTTATATTCCAAACCGATTCACCGAAGGGTATGGCCCCAATGAAGGTGCTTTTCGTTATG
CCAAAAGCATAGGGGTTCAATTAATTATTACTGTTGATACAGGTATTGCTGCAGTACATGAAGCACAAGTGGCAAAGGAA
TTAGACATAGATTTAATCATTACCGATCATCATGAACCTGGTCCAGTGTTACCAGAGGCACTAGCGATTATTCACCCAAA
AATAGAAGGTAGTAAATATCCGTTTCGCGATCTAGCAGGGGTTGGTGTTGCTTTTAAGCTATCCCATGCTTTATATGGTA
GTGTTCCTCTTCATTTATTGCCATTTGCAGCAATAGGAACGATTGCTGACCTTGTCTCCTTGACTGGGGAAAATCGTCTT
CTTGCGAAAAAAGGAATCAAAGCATTACAAGAAACAAATAATATCGGTTTAAATGCATTATACCGCCAAATGAATGTAGA
AAAAAATGCGATTAACGAAGAAACAATTGGATTTATGCTTGCCCCCCGAATTAATGCAATAGGAAGATTAGGAAGTGCTG
ATCCTGCGGTAGAGCTATTATCAACTGACGATCCAGAGCTTGCGAAAGAGCTTGCATTAGAAATGGAAGAAACCAATAAG
GAAAGACAAGCCATTGTAAATCAAATCACAGAGGAAGCGATAGAACAAGTCGAACAAAACTACCCCTTGGCTGAAAATCG
CGTTCTAATAGTTGGGAAAGAAGGGTGGAATCCAGGAGTAGTAGGAATTGTTGCTTCAAGATTGGTAGAGAAGTTCTACC
GTCCAACGATTATATTAAGCTTTGATTATGAAAAGGGTGTAGCAAAAGGGTCTGCTCGTAGTATTGAAGGATTTGATTTA
TATCAAAATTTATCGACTTGTAGAGATATTCTGCCCCATTTTGGTGGCCATCCAATGGCAGCAGGAATGTCCTTGAAAAT
AGACGATGTAGATGTGCTAAGAAATAACTTAAACAAATTAGCCTTTGATCAATTAACGGAGGAAGATCTCGTGCCATTAA
CAAAGGTGGATGGCAGTTTTTCGATAAGTGACATTTCCATTCAGTCAATAGAGGATATGCAAATGTTGCCTCCGTTTGGT
GTTGATAATCCGAAACCGAAGCTGACATTCTGTGATTTAGAAGTAGAGAACATGAGGAAAATAGGTTCAAATCAAAACCA
TTTAAAAATTTTATTAAAGCAAAATGAATTTGATTTGGATGGTATAGGGTTTGGAATTGGTGACTTATGTGATCATATTG
CTCCAAATGCAAAAGTATCTGTATTGGGAGAACTTTCGATAAACGAATGGAATAATCGCAAAAAAACACAAATCTTTATT
CAAGATATCGAGGTTTCTCATTGGCAGCTATTTGACTATCGAAGTTTGAGGAAAATGAATCATTTATATGATGTAGTACC
TGAAAATGCTCATTGGATTTTCTTCCATCAAGACTCTGTTCCAAAGGATATGAATCAACAAGTCTCCTATCAGGTAATGG
AAACGATAGAACAAGCAGCTTTTTTTGAGTCAGTCGATAATGCTATAGTATTAGCAGATTATCCGCCAAATATAGATATG
TTAAAAACGTTGTTAGCGAACAATCAACCTGAAAGAATCTATGCTGTTTTTTATAAACAACAAAGTGACTTTTTTAGTAC
GATGCCAACTCGAGACCATTTTAAATGGTTCTATGCCTTTTTAGCGAAACAGGGGATGTTTCACCTCGGAAAATTCGGTG
GAGAGCTAGCTAGAAGAAAAGGTTGGAGTAAAGAAACGGTAGATTTTATGTCAAAGGTGTTTTTTGAATTGAATTTTGTT
ACAATGAAGGATGGATTTATTTCATTGAATAAGAATGTACCGAAAAGAGATTTATCAGAGTCTATCTCTTTTCAACAAAA
GCAGGCGCAATTTGAGCTAGAAAATGAATTGATTTATTCATCTTATGAGCAACTTAAAAATTGGTTTGATCTTATTCTAA
AGAAATCCGTTAATAATGAGGAGGCAGTAAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(84-209)

RecJ OB domain (RecJ_OB)

(456-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-769)

DHHA1 domain (DHHA1)

(316-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.852

100

0.53