Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NKG37_RS23925 Genome accession   NZ_CP100420
Coordinates   4948379..4950805 (-) Length   808 a.a.
NCBI ID   WP_254415441.1    Uniprot ID   -
Organism   Niallia sp. RD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4943379..4955805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKG37_RS23905 (NKG37_23905) - 4944940..4946256 (-) 1317 WP_254415300.1 ISLre2 family transposase -
  NKG37_RS23910 (NKG37_23910) - 4946465..4947544 (-) 1080 WP_254415440.1 AI-2E family transporter -
  NKG37_RS23915 (NKG37_23915) - 4947678..4947809 (-) 132 WP_084668708.1 DUF3918 family protein -
  NKG37_RS23920 (NKG37_23920) - 4947865..4948053 (-) 189 WP_016202904.1 hypothetical protein -
  NKG37_RS23925 (NKG37_23925) recD2 4948379..4950805 (-) 2427 WP_254415441.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NKG37_RS23930 (NKG37_23930) - 4950839..4951489 (-) 651 WP_254415442.1 tetratricopeptide repeat protein -
  NKG37_RS23935 (NKG37_23935) mnmA 4952008..4953123 (-) 1116 WP_254416437.1 tRNA 2-thiouridine(34) synthase MnmA -
  NKG37_RS23940 (NKG37_23940) - 4953176..4954318 (-) 1143 WP_101730771.1 cysteine desulfurase family protein -
  NKG37_RS23945 (NKG37_23945) - 4954827..4955246 (-) 420 WP_101730770.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91174.10 Da        Isoelectric Point: 4.6592

>NTDB_id=705046 NKG37_RS23925 WP_254415441.1 4948379..4950805(-) (recD2) [Niallia sp. RD1]
MNEQNSLDLFEQEKKYVKGRHLVTIFHNEQNLYSVIRIRVDETNHDYDDKEAVITGYLPKMNEEETYTYYGDFKEHPRFG
LQLQATSFRKEMPQTKQGVVAYLSSNLFKGIGEKTAENIVDTLGEEAISKIMNQPSVLDTVPKLAADKAKILYDTLMKNQ
GLEQAMVSLNQYGFGPQLSMKIYQVYKENTLEVVQTNPYKLVEDIEGIGFGKADDLGSQIGITGNHPDRLKAGCLYILEL
SSNQEGHVYLQAEYLLEKVKVLLEENQKEEIEFSQIAEQIIQLEEEGKIIVEDKKIYLPSLFFSEKGLVRNIKRVMEQSE
YKDQFPESEFLLALGNLEDRIGVQYAPSQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPNDYKNDE
PYPFILAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTGKFERDEDHPLEGKILIVDETSMVDIWLAHQLFKALPEHIQVI
IVGDEDQLPSVGPGQVLKDLLDSACIPTVKLKDIYRQAEGSSIIELAHEMKKGQLPANLLVPQGDRSFIKCSSSQIPQAI
EKIVLNAKNKGFAPMDIQVLAPMYRGPAGIDRLNAILQEILNPNPDGTRKELKFGDVTYRIGDKVLQLVNQPESNVFNGD
MGEIVSIFYAKENTEKQDMVIVSFDGIEATYTRQDLNQITLAYCCSVHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGIT
RSKQFLILCGEVEAIELGVSRNDELNRQTTLKEKIKEAFADVYQPDETKEMTSENSFDLLYEGKINQIDPMIGMENITPY
DFMETSEV

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=705046 NKG37_RS23925 WP_254415441.1 4948379..4950805(-) (recD2) [Niallia sp. RD1]
TTGAACGAGCAGAACTCCTTGGATCTTTTTGAACAAGAAAAAAAGTATGTTAAGGGACGTCATCTTGTTACCATTTTTCA
TAATGAACAGAACCTTTACTCTGTAATAAGAATAAGAGTAGACGAAACGAATCATGATTATGATGATAAAGAAGCGGTTA
TTACTGGCTATTTGCCGAAGATGAATGAAGAAGAGACATATACATACTATGGTGATTTTAAAGAGCATCCAAGATTCGGG
CTACAGCTGCAGGCAACTTCCTTTCGAAAAGAAATGCCACAAACAAAGCAAGGGGTTGTGGCTTATTTATCCAGTAATCT
GTTTAAAGGGATTGGGGAAAAAACAGCTGAAAATATAGTGGATACATTGGGAGAAGAGGCAATATCTAAAATCATGAATC
AGCCATCGGTTTTAGACACAGTGCCTAAACTTGCAGCTGATAAAGCGAAAATATTATATGATACCTTAATGAAAAACCAG
GGCTTAGAACAAGCAATGGTTTCGCTAAATCAATACGGTTTTGGTCCACAATTATCGATGAAAATTTATCAAGTATACAA
AGAAAATACTTTAGAAGTGGTTCAGACTAATCCGTATAAATTGGTGGAAGATATAGAAGGGATTGGTTTTGGAAAGGCAG
ATGATCTTGGTTCACAAATCGGAATTACAGGTAATCATCCAGATCGTTTAAAAGCTGGGTGCTTGTATATTTTAGAGCTA
AGCAGTAATCAAGAAGGTCATGTCTATCTTCAAGCTGAATATTTGCTTGAAAAAGTTAAAGTGTTACTTGAAGAAAATCA
AAAAGAGGAAATAGAATTTTCGCAAATAGCAGAGCAGATTATTCAGCTAGAAGAAGAAGGGAAAATTATAGTTGAGGATA
AAAAAATATATTTGCCTTCTTTGTTTTTTTCGGAAAAAGGACTTGTACGAAATATTAAGCGGGTAATGGAACAATCAGAA
TATAAGGATCAATTTCCAGAATCAGAATTTTTGCTTGCCTTAGGAAATTTGGAGGACCGCATTGGCGTTCAGTATGCTCC
ATCGCAACGAGAAGCGATTCAAACGGCGCTTATGTCTCCGATGCTTATTTTGACAGGTGGTCCTGGTACAGGAAAAACGA
CAGTAATCAAAGGAATTGTTGAATTATATGGAGAATTGCATGGTTGTTCCTTAGATCCAAACGATTACAAAAATGATGAG
CCCTATCCGTTTATTCTTGCTGCACCGACTGGCAGAGCTGCAAAGCGAATGGCTGAATCGACTGGTTTACCTGCTGTTAC
GATTCATCGATTGTTAGGCTGGAATGGGACAGGGAAATTTGAGCGAGATGAGGATCATCCTCTCGAAGGTAAAATTCTCA
TAGTGGATGAAACATCGATGGTAGATATTTGGTTAGCCCATCAATTATTTAAAGCCTTGCCTGAGCATATTCAAGTCATT
ATTGTTGGGGACGAAGATCAACTACCCTCAGTGGGACCAGGTCAAGTTCTAAAGGATTTACTTGATTCAGCTTGTATTCC
TACTGTAAAGCTGAAAGATATTTATCGTCAAGCAGAAGGGTCATCTATCATCGAATTAGCACATGAAATGAAAAAGGGAC
AGTTACCGGCTAATTTGCTTGTACCACAAGGAGATCGATCCTTCATAAAGTGCTCTTCCAGTCAAATTCCACAAGCAATT
GAAAAAATTGTTTTAAATGCAAAAAATAAGGGATTTGCACCAATGGATATTCAAGTATTGGCACCGATGTATAGAGGACC
TGCAGGTATTGATCGGTTAAATGCTATTTTACAGGAGATTTTAAATCCTAATCCTGACGGAACCAGAAAAGAGCTGAAAT
TCGGAGACGTTACATACCGAATAGGGGATAAAGTCCTTCAACTAGTCAATCAACCAGAAAGCAATGTTTTTAATGGCGAT
ATGGGAGAGATTGTATCGATTTTTTATGCGAAGGAAAATACGGAAAAGCAAGACATGGTTATTGTTTCGTTCGATGGTAT
CGAAGCAACTTATACACGACAGGATTTAAATCAAATTACCCTTGCTTACTGCTGCTCTGTCCACAAATCGCAAGGAAGTG
AGTTTCCAATCGTCATCATGCCTATCGTTAAAAGCTATTATCGCATGTTGAGACGGAATCTCATTTATACGGGCATCACA
AGAAGCAAACAATTTTTAATTCTTTGCGGTGAGGTAGAAGCGATAGAATTGGGAGTTAGTCGAAATGACGAGCTGAATCG
GCAAACTACCTTAAAAGAAAAAATCAAAGAGGCATTCGCTGATGTATACCAACCAGACGAAACGAAAGAAATGACGTCAG
AGAATTCATTTGATTTATTGTACGAAGGCAAAATCAATCAAATTGATCCAATGATTGGTATGGAAAATATCACACCGTAT
GACTTTATGGAAACGTCTGAAGTATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.887

98.391

0.609