Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NLY35_RS04195 Genome accession   NZ_CP100418
Coordinates   826880..827719 (+) Length   279 a.a.
NCBI ID   WP_024417501.1    Uniprot ID   -
Organism   Streptococcus suis strain STC104     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 821880..832719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS04165 (NLY35_04165) - 822344..823222 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  NLY35_RS04170 (NLY35_04170) atpD 823242..824648 (+) 1407 WP_024417504.1 F0F1 ATP synthase subunit beta -
  NLY35_RS04175 (NLY35_04175) - 824658..825074 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  NLY35_RS04180 (NLY35_04180) - 825134..825358 (+) 225 WP_024387485.1 DUF1146 family protein -
  NLY35_RS04185 (NLY35_04185) murA 825383..826666 (+) 1284 WP_024417502.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NLY35_RS04190 (NLY35_04190) - 826659..826850 (+) 192 WP_002936005.1 DNA-directed RNA polymerase subunit beta -
  NLY35_RS04195 (NLY35_04195) endA 826880..827719 (+) 840 WP_024417501.1 DNA/RNA non-specific endonuclease Machinery gene
  NLY35_RS04200 (NLY35_04200) - 827906..829468 (+) 1563 WP_254369416.1 MFS transporter -
  NLY35_RS04205 (NLY35_04205) - 829691..830644 (+) 954 WP_024376800.1 IS30 family transposase -
  NLY35_RS04210 (NLY35_04210) - 830761..831789 (+) 1029 WP_172001109.1 sugar kinase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30187.41 Da        Isoelectric Point: 6.2370

>NTDB_id=704971 NLY35_RS04195 WP_024417501.1 826880..827719(+) (endA) [Streptococcus suis strain STC104]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGIPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRIRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=704971 NLY35_RS04195 WP_024417501.1 826880..827719(+) (endA) [Streptococcus suis strain STC104]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCATAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACAGATTTAGATGCATCGGTTGCCAGTGTACCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTATCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591