Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NHN23_RS06195 Genome accession   NZ_CP099990
Coordinates   1273257..1275653 (+) Length   798 a.a.
NCBI ID   WP_069801583.1    Uniprot ID   -
Organism   Staphylococcus equorum strain PU1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268257..1280653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHN23_RS06175 sal 1268504..1270147 (+) 1644 WP_253345704.1 Sal family ABC-F type ribosomal protection protein -
  NHN23_RS06180 - 1270208..1271350 (+) 1143 WP_021339127.1 cysteine desulfurase family protein -
  NHN23_RS06185 mnmA 1271351..1272463 (+) 1113 WP_253345705.1 tRNA 2-thiouridine(34) synthase MnmA -
  NHN23_RS06190 - 1272588..1273253 (+) 666 WP_253345706.1 tetratricopeptide repeat protein -
  NHN23_RS06195 recD2 1273257..1275653 (+) 2397 WP_069801583.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NHN23_RS06200 alaS 1276007..1278637 (+) 2631 WP_071664974.1 alanine--tRNA ligase -
  NHN23_RS06205 - 1278707..1278967 (+) 261 WP_002507438.1 IreB family regulatory phosphoprotein -
  NHN23_RS06210 ruvX 1278971..1279399 (+) 429 WP_002507439.1 Holliday junction resolvase RuvX -
  NHN23_RS06215 - 1279416..1279748 (+) 333 WP_002507440.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89809.69 Da        Isoelectric Point: 4.5466

>NTDB_id=703278 NHN23_RS06195 WP_069801583.1 1273257..1275653(+) (recD2) [Staphylococcus equorum strain PU1]
MEDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIETNEDFVSMPTIVGFFPEIAEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPAVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLKVVENTPYQLVYDVKGIGFNKADALARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTNNVMEMTQDMLSQPPAEMIDAQQLINVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTHTNKLKEIE
QSELLLEIGEIENRNEVTYADSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQYGSSIIELAHRMKLGEAIDITQRFHDRNFIKCTTEQIPTVVEKVVTSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKDKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDILVVDFEGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLIFL
GDPQAFDIGLKTHGQVRMTQLCTFLKTYFNNEVTEDAEDSIAISKTIDADIILTEDTIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=703278 NHN23_RS06195 WP_069801583.1 1273257..1275653(+) (recD2) [Staphylococcus equorum strain PU1]
ATGGAAGACCCTACATTATTTAACAATTCAATGATTAAAGGAACCGTGGATGCTATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAGGTAGATACAATTGAAACAAATGAAGATTTCGTTTCAATGCCTACAATTGTAGGGTTTTTCCCGG
AAATTGCTGAAGGTGATGTCTATACGTTTAAAGGCCAAGTTGTAACACATTCTAAATATGGTAAGCAACTCAAAGCTGAA
ACGTTTGAAAAAGAGTTGCCGCAAACAAAAGAAGCAATCATTAGTTATTTATCCAGCGATCTTTTTAAAGGTATTGGTAA
AAAAACTGCACAAAGTATTGTAAATAAGTTAGGCGAGAATGCCATTAGTGATATATTAAATGATCCTGCTGTTTTAGAAA
AAGTACCGAGTCTACCAAAAAAGAAACAAAAGCAAATCGCAGAACAAATCGCTAGTAATCAAGAAACAGAACAAATCATT
ATACGACTTCACGACTTAGGTTTTGGTCCGAAGCTTGCTATGGCAATATACCAAGCCTATTTAGGTGAGACACTTAAAGT
TGTTGAAAATACACCATACCAATTGGTTTATGATGTAAAAGGAATCGGTTTTAATAAAGCAGATGCTTTAGCACGTAACG
TGGGGATTCAATTTAATGATGATGAACGTCTGAAAGCTGGTTTGTTATATGTTTTAGAAGAAGAATGTATTAAACAAGGC
CATACATATTTACCTACAAATAATGTTATGGAAATGACACAAGATATGTTGTCTCAACCACCAGCAGAAATGATTGATGC
ACAACAACTTATAAATGTATTGCAAGATTTAGTAAATGATACGAAATTAATCCAACAAGAAAATGAAGTTGCTATACCAA
GTTTGTATTATTCAGAGTTGAAAAGTGTTCAAAACTTATATCGCAATTTTACGCATACAAATAAATTAAAAGAAATTGAG
CAATCAGAATTATTGCTTGAAATTGGTGAAATAGAGAACCGTAATGAAGTAACATATGCCGACTCACAAAGAGACGCGCT
ACAAACTGCAATCAATACTAAAATCATGTTACTAACTGGTGGTCCAGGTACTGGTAAAACGACAGTAATCAAAGGTATCG
TAGAGCTATATGCAGAGATTCATGGTTTATCGTTAGACTATGATGATTACCAAAATGACGATTACCCTGTTGTGCTTGCG
GCACCTACCGGCAGAGCATCAAAGCGGCTTGCAGAATCTACAGGATTAGAAGCAATGACGATACATCGGCTCATTGGTTG
GAATCAAGATACACAACCTGAAGATATTTTAGAAAATGAAATATCTGCAAAACTTATTATTATAGATGAGATGTCGATGG
TTGATACATGGCTTTTTCATCAGTTTTTGAGTGCAGTACCTATAGACGCACAAGTTATATTAGTAGGTGATGAAGATCAA
TTACCATCTGTTGGTCCTGGACAAGTGTTTAAAGATTTAATCGATTCAAAAGTTATCCCACGTGTCAATTTAACTGAAGT
ATACCGCCAACAATACGGTTCTAGTATTATTGAGTTGGCACATAGAATGAAATTGGGCGAAGCAATTGATATTACACAGC
GTTTCCATGATCGTAACTTTATCAAATGTACGACTGAACAAATACCCACAGTAGTTGAAAAAGTAGTGACAAGTGCAGTA
AATAAAGGATATGACATGAGTGATATTCAGGTATTAGCACCTATGTATAAAGGTTCCGCAGGTATTAAAAAACTAAATAC
GGTCTTGCAAGATATATTGAACCCTAAAGACAAAGATACTCGAGAAATTGAGTTTGGTGATGTTGTTTTTAGAAAAGGAG
ATAAGGTTTTACAACTTGTGAACCGACCAAGTGATAATATTTTTAATGGTGATATCGGTGTAATCGTAGGTATATTTTGG
GCGAAAGAAAATGCATTAAATAAAGACATACTTGTCGTTGATTTTGAGGGCAATGAAATAACGTTTGTTCGAAAAGATTT
ATTAGAATTAACACATGCATATTGCACATCTATTCATAAGTCTCAGGGTTCTGAGTTTCCTATAGTCATCATGCCAATGG
TCAAGCAATATTTTAGAATGTTACAAAAACCTATTTTATATACAGGGCTTACTCGAGCGAAGCAGTCGCTCATATTTTTA
GGTGACCCACAAGCATTTGATATTGGATTGAAAACACACGGTCAAGTGAGAATGACACAATTATGTACATTTCTGAAAAC
TTATTTCAATAACGAAGTAACTGAAGATGCTGAAGATAGTATTGCAATCAGTAAAACAATTGATGCAGATATCATATTGA
CTGAAGATACTATCTTTAAAATTAACCCTATGATCAACATGGGAGACATTTCACCATATGACTTTGTAGAAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.125

100

0.501