NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	NG812_RS08890	Genome accession	NZ_CP099987
Coordinates	1803270..1804205 (-)	Length	311 a.a.
NCBI ID	WP_014025404.1	Uniprot ID	A0A6L2ZWA9
Organism	Lactococcus garvieae strain FUA009
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1798270..1809205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG812_RS08865 (NG812_08830)	-	1798317..1799177 (-)	861	WP_003133325.1	S1 RNA-binding domain-containing protein	-
NG812_RS08870 (NG812_08835)	frr	1799285..1799842 (-)	558	WP_003133324.1	ribosome recycling factor	-
NG812_RS08875 (NG812_08840)	pyrH	1799872..1800588 (-)	717	WP_003133322.1	UMP kinase	-
NG812_RS08880 (NG812_08845)	-	1800679..1801872 (-)	1194	WP_003133320.1	acetate kinase	-
NG812_RS08885 (NG812_08850)	-	1801992..1803185 (-)	1194	WP_003133318.1	acetate kinase	-
NG812_RS08890 (NG812_08855)	comYH	1803270..1804205 (-)	936	WP_014025404.1	class I SAM-dependent methyltransferase	Machinery gene
NG812_RS08895 (NG812_08860)	-	1804251..1804481 (-)	231	WP_003133314.1	DUF3165 family protein	-
NG812_RS08900 (NG812_08865)	typA	1804557..1806398 (-)	1842	WP_003133313.1	translational GTPase TypA	-
NG812_RS08905 (NG812_08870)	-	1806719..1806931 (+)	213	WP_003133311.1	YqgQ family protein	-
NG812_RS08910 (NG812_08875)	-	1806924..1807889 (+)	966	WP_003133309.1	ROK family glucokinase	-
NG812_RS08915 (NG812_08880)	-	1807909..1808289 (+)	381	WP_393186963.1	rhodanese-like domain-containing protein	-
NG812_RS08920 (NG812_08885)	-	1808329..1808775 (-)	447	WP_003133306.1	DNA starvation/stationary phase protection protein	-

Sequence

Protein

Download Length: 311 a.a. Molecular weight: 35138.19 Da Isoelectric Point: 4.6737

                                >NTDB_id=703208 NG812_RS08890 WP_014025404.1 1803270..1804205(-) (comYH) [Lactococcus garvieae strain FUA009]

MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV

APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE

ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ

SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

Download Length: 936 bp

                                >NTDB_id=703208 NG812_RS08890 WP_014025404.1 1803270..1804205(-) (comYH) [Lactococcus garvieae strain FUA009]

ATGGATATAGAGAAAATTGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA

TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG

ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC

GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA

AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCACATGCAAAAAG

AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCCGAAGTCATGGGAACAGAA

GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG

TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA

TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG

TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCATCACTCTTTAAAGG

TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG

ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(132-286)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6L2ZWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492

Detailed information NTG0703208