Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NG806_RS19580 Genome accession   NZ_CP099966
Coordinates   4320485..4321135 (-) Length   216 a.a.
NCBI ID   WP_214832938.1    Uniprot ID   -
Organism   Chryseobacterium paludis strain CJ51     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4315485..4326135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG806_RS19565 der 4317472..4318782 (+) 1311 WP_214832944.1 ribosome biogenesis GTPase Der -
  NG806_RS19570 upp 4319031..4319681 (+) 651 WP_261511094.1 uracil phosphoribosyltransferase -
  NG806_RS19575 - 4319683..4320372 (-) 690 WP_261511095.1 alpha/beta fold hydrolase -
  NG806_RS19580 comF 4320485..4321135 (-) 651 WP_214832938.1 ComF family protein Machinery gene
  NG806_RS19585 - 4321191..4322687 (-) 1497 WP_261511096.1 helix-turn-helix domain-containing protein -
  NG806_RS19590 aceB 4322814..4324388 (+) 1575 WP_261511097.1 malate synthase A -
  NG806_RS19595 aceA 4324530..4325813 (+) 1284 WP_390882593.1 isocitrate lyase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25614.87 Da        Isoelectric Point: 9.2774

>NTDB_id=703045 NG806_RS19580 WP_214832938.1 4320485..4321135(-) (comF) [Chryseobacterium paludis strain CJ51]
MILNLLFPNRCIHCNRVIDADILVCDLCFKHIHFTHYDYFDENIIKEKCKLLFPVENTYALMQFEEKNLSRKIIHELKYR
SREKTGKILAYWITERLDFKSKKPDLLVSVPLHPKKEKERGYNQLHLFTEILASFYDIPFDHHLIKRNHYSKAQALKDKK
HRLKNENTFSITRNISEKHILLIDDVFTTGNTVSTIAWEILKTGNNKVSILVMAID

Nucleotide


Download         Length: 651 bp        

>NTDB_id=703045 NG806_RS19580 WP_214832938.1 4320485..4321135(-) (comF) [Chryseobacterium paludis strain CJ51]
ATGATTCTAAATCTACTTTTCCCTAACCGTTGCATCCATTGCAACCGGGTCATCGATGCCGATATATTGGTATGTGATCT
TTGTTTTAAGCATATCCATTTTACTCATTATGATTACTTTGATGAAAATATCATTAAAGAAAAATGCAAACTTTTATTTC
CTGTTGAAAATACCTATGCTCTTATGCAGTTTGAAGAAAAAAACCTTAGCCGCAAGATCATTCACGAACTAAAGTACAGA
AGCCGGGAGAAAACCGGAAAAATCCTTGCCTATTGGATTACAGAAAGGTTAGATTTTAAAAGCAAAAAGCCTGACCTTCT
GGTAAGTGTCCCTCTTCATCCTAAGAAAGAAAAAGAAAGAGGCTACAATCAACTACACCTTTTTACCGAAATATTAGCCA
GCTTTTATGACATTCCATTTGACCATCATTTAATTAAAAGAAATCATTACTCGAAAGCCCAGGCTTTGAAAGATAAAAAA
CACCGCCTAAAAAATGAAAACACATTTTCAATAACCCGAAATATTTCAGAAAAACACATTTTATTAATTGACGATGTGTT
CACCACCGGAAATACGGTATCTACTATTGCCTGGGAGATTTTAAAAACTGGAAATAACAAAGTGAGCATTCTGGTAATGG
CGATAGATTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.852

100

0.519