Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI383_RS08805 Genome accession   NZ_CP099955
Coordinates   157421..158146 (-) Length   241 a.a.
NCBI ID   WP_069537396.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152421..163146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS08780 (NI383_08730) - 153540..154031 (+) 492 WP_005458943.1 type II secretion system protein M -
  NI383_RS08785 (NI383_08735) - 154033..154794 (+) 762 WP_021486905.1 type II secretion system protein N -
  NI383_RS08790 (NI383_08740) cysQ 155080..155907 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI383_RS08795 (NI383_08745) nudE 155949..156518 (-) 570 WP_021448936.1 ADP compounds hydrolase NudE -
  NI383_RS08800 (NI383_08750) nfuA 156739..157323 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  NI383_RS08805 (NI383_08755) comF 157421..158146 (-) 726 WP_069537396.1 ComF family protein Machinery gene
  NI383_RS08810 (NI383_08760) bioH 158231..158998 (+) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  NI383_RS08815 (NI383_08765) - 159122..159586 (+) 465 WP_005459035.1 hypothetical protein -
  NI383_RS08820 (NI383_08770) - 159722..162043 (-) 2322 WP_024703491.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27736.89 Da        Isoelectric Point: 8.9991

>NTDB_id=702875 NI383_RS08805 WP_069537396.1 157421..158146(-) (comF) [Vibrio parahaemolyticus strain Isc4A]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702875 NI383_RS08805 WP_069537396.1 157421..158146(-) (comF) [Vibrio parahaemolyticus strain Isc4A]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTATGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485