Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI392_RS08815 Genome accession   NZ_CP099950
Coordinates   150163..150888 (-) Length   241 a.a.
NCBI ID   WP_025998648.1    Uniprot ID   A0AAW9AHG9
Organism   Vibrio alginolyticus strain Isc1B     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145163..155888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS08790 (NI392_08785) - 146316..146807 (+) 492 WP_005383002.1 type II secretion system protein M -
  NI392_RS08795 (NI392_08790) - 146809..147570 (+) 762 WP_062730773.1 type II secretion system protein N -
  NI392_RS08800 (NI392_08795) cysQ 147863..148690 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI392_RS08805 (NI392_08800) nudE 148735..149304 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  NI392_RS08810 (NI392_08805) nfuA 149481..150065 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  NI392_RS08815 (NI392_08810) comF 150163..150888 (-) 726 WP_025998648.1 amidophosphoribosyltransferase Machinery gene
  NI392_RS08820 (NI392_08815) bioH 150973..151740 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  NI392_RS08825 (NI392_08820) - 151865..152329 (+) 465 WP_005379316.1 hypothetical protein -
  NI392_RS08830 (NI392_08825) - 152434..154755 (-) 2322 WP_169644339.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.95 Da        Isoelectric Point: 9.2064

>NTDB_id=702784 NI392_RS08815 WP_025998648.1 150163..150888(-) (comF) [Vibrio alginolyticus strain Isc1B]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702784 NI392_RS08815 WP_025998648.1 150163..150888(-) (comF) [Vibrio alginolyticus strain Isc1B]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAAAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473