Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP76_RS01520 Genome accession   NZ_CP115297
Coordinates   307835..308260 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302835..313260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP76_RS01500 (PCP76_01500) ileS 302992..305823 (+) 2832 WP_042168473.1 isoleucine--tRNA ligase -
  PCP76_RS01505 (PCP76_01505) lspA 305816..306325 (+) 510 WP_025271359.1 signal peptidase II -
  PCP76_RS01510 (PCP76_01510) fkpB 306318..306758 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PCP76_RS01515 (PCP76_01515) ispH 306844..307788 (+) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PCP76_RS01520 (PCP76_01520) comF 307835..308260 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PCP76_RS01525 (PCP76_01525) pilY2 308257..308604 (-) 348 WP_033972924.1 type 4a fimbrial biogenesis protein PilY2 -
  PCP76_RS01530 (PCP76_01530) pilY1 308606..312091 (-) 3486 WP_073649715.1 type 4a pilus biogenesis protein PilY1 -
  PCP76_RS01535 (PCP76_01535) pilX 312103..312690 (-) 588 WP_033972921.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=702770 PCP76_RS01520 WP_003094721.1 307835..308260(-) (comF) [Pseudomonas aeruginosa strain 135]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=702770 PCP76_RS01520 WP_003094721.1 307835..308260(-) (comF) [Pseudomonas aeruginosa strain 135]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCTCGCC
AGGAACGCTACTATTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383