Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NI380_RS14965 Genome accession   NZ_CP099934
Coordinates   3180691..3181416 (+) Length   241 a.a.
NCBI ID   WP_308386271.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3175691..3186416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI380_RS14950 (NI380_15295) - 3176796..3179117 (+) 2322 WP_029855941.1 Tex family protein -
  NI380_RS14955 (NI380_15300) - 3179251..3179715 (-) 465 WP_005459035.1 hypothetical protein -
  NI380_RS14960 (NI380_15305) bioH 3179839..3180606 (-) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  NI380_RS14965 (NI380_15310) comF 3180691..3181416 (+) 726 WP_308386271.1 phosphoribosyltransferase family protein Machinery gene
  NI380_RS14970 (NI380_15315) nfuA 3181514..3182098 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  NI380_RS14975 (NI380_15320) nudE 3182319..3182888 (+) 570 WP_140082517.1 ADP compounds hydrolase NudE -
  NI380_RS14980 (NI380_15325) cysQ 3182930..3183757 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NI380_RS14985 (NI380_15330) - 3184043..3184804 (-) 762 WP_005496730.1 type II secretion system protein N -
  NI380_RS14990 (NI380_15335) - 3184806..3185297 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27678.76 Da        Isoelectric Point: 8.7043

>NTDB_id=702743 NI380_RS14965 WP_308386271.1 3180691..3181416(+) (comF) [Vibrio parahaemolyticus strain BM26A]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEETNIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQSISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=702743 NI380_RS14965 WP_308386271.1 3180691..3181416(+) (comF) [Vibrio parahaemolyticus strain BM26A]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAACAAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCACCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGAGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCACGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.58

98.755

0.49